BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0427300 Os09g0427300|AK121239
         (137 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0427300  Conserved hypothetical protein                      178   1e-45
Os02g0695500                                                       79   1e-15
Os08g0415900                                                       76   7e-15
Os12g0181500  Similar to Amino acid carrier (Fragment)             72   1e-13
Os12g0181600  Amino acid/polyamine transporter II family pro...    72   1e-13
Os11g0195600  Similar to Amino acid carrier (Fragment)             64   2e-11

>Os09g0427300 Conserved hypothetical protein
          Length = 137

 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 87/106 (82%)

Query: 32  CGAACRHXXXXXXXXXXXXXXXXXXXRIKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCG 91
           CGAACRH                   RIKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCG
Sbjct: 32  CGAACRHSVTSPSPTPSPTSSSRSKTRIKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCG 91

Query: 92  CMNYTLPDNLLRRRSARGEGFPWGKHHQSGIGWIPSHHPIPFHVGC 137
           CMNYTLPDNLLRRRSARGEGFPWGKHHQSGIGWIPSHHPIPFHVGC
Sbjct: 92  CMNYTLPDNLLRRRSARGEGFPWGKHHQSGIGWIPSHHPIPFHVGC 137



>Os02g0695500 
          Length = 158

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 43/59 (72%), Gaps = 7/59 (11%)

Query: 59  IKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCGCMNYTLPDNLLRRRSARGEGFPWGKH 117
           IKAPPP EAKVMKSATRLSVVTTTVF  YMLCGCM Y LPDNLL      G GF    H
Sbjct: 89  IKAPPPLEAKVMKSATRLSVVTTTVF--YMLCGCMGYALPDNLL-----MGFGFTIVVH 140



>Os08g0415900 
          Length = 137

 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 39/44 (88%), Gaps = 2/44 (4%)

Query: 59  IKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCGCMNYTLPDNLL 102
           IKAPPPSEAKVMKSATRLSVVTTTVF  YMLCGCM Y L +NLL
Sbjct: 56  IKAPPPSEAKVMKSATRLSVVTTTVF--YMLCGCMGYALLNNLL 97



>Os12g0181500 Similar to Amino acid carrier (Fragment)
          Length = 475

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 38/49 (77%), Gaps = 7/49 (14%)

Query: 59  IKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCGCMNY-----TLPDNLL 102
           IKAPPPSEAKVMKSATRLSV TTTVF  YMLCGCM Y       PDNLL
Sbjct: 267 IKAPPPSEAKVMKSATRLSVATTTVF--YMLCGCMGYAAFGDAAPDNLL 313



>Os12g0181600 Amino acid/polyamine transporter II family protein
          Length = 475

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 38/49 (77%), Gaps = 7/49 (14%)

Query: 59  IKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCGCMNY-----TLPDNLL 102
           IKAPPPSEAKVMKSATRLSV TTTVF  YMLCGCM Y       PDNLL
Sbjct: 267 IKAPPPSEAKVMKSATRLSVATTTVF--YMLCGCMGYAAFGDAAPDNLL 313



>Os11g0195600 Similar to Amino acid carrier (Fragment)
          Length = 476

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 36/49 (73%), Gaps = 7/49 (14%)

Query: 59  IKAPPPSEAKVMKSATRLSVVTTTVFYMYMLCGCMNYTL-----PDNLL 102
           IKAPPPSEAKVMK AT +SV TTTVF  YMLCGCM Y       PDNLL
Sbjct: 268 IKAPPPSEAKVMKRATMVSVATTTVF--YMLCGCMGYAAFGDKSPDNLL 314



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.138    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,467,274
Number of extensions: 110725
Number of successful extensions: 354
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)