BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0360400 Os09g0360400|AK071395
(196 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0360400 Conserved hypothetical protein 333 5e-92
Os08g0397900 Conserved hypothetical protein 198 2e-51
Os01g0589500 Conserved hypothetical protein 159 1e-39
AK066191 153 7e-38
Os01g0182500 Similar to GIGANTEA protein 82 2e-16
>Os09g0360400 Conserved hypothetical protein
Length = 196
Score = 333 bits (854), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 17 TDRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVAD 76
TDRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVAD
Sbjct: 17 TDRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVAD 76
Query: 77 IASHIQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLVQSKN 136
IASHIQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLVQSKN
Sbjct: 77 IASHIQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLVQSKN 136
Query: 137 SAVFSNALSSPVRRSLQPFHLEQGGDAGYFANGVNRDQNST 177
SAVFSNALSSPVRRSLQPFHLEQGGDAGYFANGVNRDQNST
Sbjct: 137 SAVFSNALSSPVRRSLQPFHLEQGGDAGYFANGVNRDQNST 177
>Os08g0397900 Conserved hypothetical protein
Length = 210
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/150 (66%), Positives = 118/150 (78%), Gaps = 4/150 (2%)
Query: 21 LYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVADIASH 80
LYGAFRGAANSLSQLY LA Q+LSF AGERHA+EKLY+W++RQHE GLRLTV+DIASH
Sbjct: 22 LYGAFRGAANSLSQLYALAGAHQRLSFHAGERHALEKLYQWMVRQHEIGLRLTVSDIASH 81
Query: 81 IQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLVQSKNSAVF 140
IQHEI+YGGDNA SPRSQHA Q+ QA + IPNT +QQP N SK+S +F
Sbjct: 82 IQHEIEYGGDNALTSPRSQHAFQNLQAPMHIPNTSTQQPPSCSITPSNP----SKDSMIF 137
Query: 141 SNALSSPVRRSLQPFHLEQGGDAGYFANGV 170
S ALSSPVR++LQ +H++Q GD G FA+G+
Sbjct: 138 SKALSSPVRQNLQLYHVQQCGDTGCFADGI 167
>Os01g0589500 Conserved hypothetical protein
Length = 244
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 112/172 (65%), Gaps = 21/172 (12%)
Query: 18 DRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVADI 77
DR LY F GAANSLSQLYT AM QKLSFQAGERH++EKL++WILR+HE RLT ADI
Sbjct: 61 DRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQWILRKHEEESRLTAADI 120
Query: 78 ASHIQHEIQYGGDNASASPR-SQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLV---- 132
SHIQHE+ YGG++ SPR QH++ P N+ S QPS + G
Sbjct: 121 MSHIQHELDYGGNDPHVSPRVHQHSAN------PFANS-SIQPSAGSYGQATVGFAPRPS 173
Query: 133 ---QSKNSAVFSNALSSPVRRSLQPFHLEQG-GDAGYFAN----GVNRDQNS 176
QSKN+ +FSNALSSPVRRSLQ +HL QG G+ G A G NR+ NS
Sbjct: 174 ISDQSKNT-IFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAGQNRETNS 224
>AK066191
Length = 208
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/150 (57%), Positives = 101/150 (67%), Gaps = 16/150 (10%)
Query: 18 DRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVADI 77
DR LY F GAANSLSQLYT AM QKLSFQAGERH++EKL++WILR+HE RLT ADI
Sbjct: 56 DRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQWILRKHEEESRLTAADI 115
Query: 78 ASHIQHEIQYGGDNASASPR-SQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLV---- 132
SHIQHE+ YGG++ SPR QH++ P N+ S QPS + G
Sbjct: 116 MSHIQHELDYGGNDPHVSPRVHQHSAN------PFANS-SIQPSAGSYGQATVGFAPRPS 168
Query: 133 ---QSKNSAVFSNALSSPVRRSLQPFHLEQ 159
QSKN+ +FSNALSSPVRRSLQ +HL Q
Sbjct: 169 ISDQSKNT-IFSNALSSPVRRSLQSYHLTQ 197
>Os01g0182500 Similar to GIGANTEA protein
Length = 276
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 9/109 (8%)
Query: 21 LYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVADIASH 80
++ AFRGAAN+LSQ+Y A+ Q+ SF+AGER AME +Y WI +H+ GL ++VAD+ +
Sbjct: 22 MHLAFRGAANALSQVYGQAVAAQEKSFRAGERRAMENVYRWICSKHQEGLEVSVADLVAF 81
Query: 81 IQHEIQYGGDNASASPRS-QHASQSTQATVPIPNTMSQQPSPNLFALGN 128
+Q EI++ A P S QH S P N S N F+ GN
Sbjct: 82 LQTEIEH---RAGEVPGSLQHTSAQPACQFPSANIQS-----NSFSFGN 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,627,902
Number of extensions: 226679
Number of successful extensions: 636
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 5
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)