Os08g0397900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0397900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.45 | 0.302 | 10.2 | -0.396 | 1.46 | 0.399 | 0.798 | 0.126 | 0.209 | 3.26 | 21.5 | 11 | -- | -- |
| 41.52 | 0.3 | 10.2 | -0.428 | 1.45 | 0.394 | 0.714 | -- | 0.199 | 3.27 | 21.53 | 10 | -- | -- |
| 42.98 | 0.308 | 10.2 | -0.482 | 1.46 | 0.384 | -- | -0.178 | 0.188 | 3.29 | 21.5 | 11 | -- | -- |
| 43.12 | 0.306 | 10.2 | -0.439 | 1.46 | 0.393 | -- | -- | 0.198 | 3.29 | 21.56 | 10 | -- | -- |
| 101.98 | 0.47 | 10.1 | 0.0453 | -- | -0.794 | -- | 0.39 | 0.567 | -- | 26.4 | 147 | -- | -- |
| 49.27 | 0.329 | 10.2 | -0.307 | 1.34 | -- | 0.701 | -- | 0.302 | 3.49 | -- | -- | -- | -- |
| 50.79 | 0.334 | 10.2 | -0.319 | 1.35 | -- | -- | -- | 0.298 | 3.5 | -- | -- | -- | -- |
| 102.41 | 0.471 | 10.1 | -0.0607 | -- | -0.772 | -- | -- | 0.536 | -- | 26.34 | 153 | -- | -- |
| 48.01 | 0.323 | 10.2 | -- | 1.45 | 0.335 | -- | -- | 0.263 | 3.31 | 21.6 | 10 | -- | -- |
| 152.42 | 0.577 | 10.2 | -0.263 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 53.48 | 0.342 | 10.2 | -- | 1.34 | -- | -- | -- | 0.334 | 3.5 | -- | -- | -- | -- |
| 102.51 | 0.472 | 10.1 | -- | -- | -0.776 | -- | -- | 0.543 | -- | 26.35 | 153 | -- | -- |
| 154.24 | 0.58 | 10.2 | -- | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.78 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 11 | 40.98 | wind | 3 | 14400 | < th | dose dependent | sin | 10 | NA |
| 12 | 40.98 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 43 | 41.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 49 | 41.12 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 51 | 41.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 9 |
| 56 | 41.14 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 57 | 41.14 | wind | 3 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 71 | 41.17 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 81 | 41.20 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 89 | 41.21 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 102 | 41.23 | wind | 1 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 121 | 41.25 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 136 | 41.27 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 166 | 41.31 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 191 | 41.35 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 192 | 41.35 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 196 | 41.35 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 213 | 41.37 | wind | 1 | 14400 | < th | dose independent | sin | 6 | NA |
| 214 | 41.37 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 243 | 41.39 | wind | 1 | 14400 | > th | dose independent | sin | 5 | NA |
| 250 | 41.39 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 271 | 41.41 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 305 | 41.43 | wind | 1 | 14400 | > th | dose dependent | rect. | 18 | 14 |
| 342 | 41.46 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 407 | 41.51 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 11 |
| 410 | 41.51 | wind | 1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 417 | 41.51 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 18 |
| 427 | 41.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 11 |
| 473 | 41.55 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 486 | 41.56 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 612 | 41.63 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 720 | 41.69 | wind | 1 | 14400 | > th | dose dependent | sin | 10 | NA |
| 770 | 41.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 785 | 41.72 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 902 | 41.77 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 933 | 41.78 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 22 |