Os01g0182500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GIGANTEA protein.
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Os01g0182500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GIGANTEA protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.09 | 0.373 | 7.4 | 0.246 | 0.36 | 0.867 | -0.973 | 0.776 | 0.373 | 4.96 | 21.11 | 1585 | -- | -- |
| 63.94 | 0.372 | 7.43 | 0.0625 | 0.369 | 0.792 | -1.01 | -- | 0.318 | 4.94 | 21.4 | 1620 | -- | -- |
| 65.44 | 0.377 | 7.39 | 0.252 | 0.368 | 0.88 | -- | 0.811 | 0.379 | 5.28 | 21.1 | 1590 | -- | -- |
| 66.43 | 0.38 | 7.42 | 0.0786 | 0.354 | 0.768 | -- | -- | 0.33 | 5.77 | 21.6 | 2100 | -- | -- |
| 71.79 | 0.395 | 7.41 | 0.24 | -- | 0.869 | -- | 0.666 | 0.369 | -- | 21.2 | 1451 | -- | -- |
| 80.84 | 0.422 | 7.38 | 0.406 | 0.36 | -- | -1.08 | -- | 0.545 | 4.91 | -- | -- | -- | -- |
| 83.73 | 0.429 | 7.37 | 0.41 | 0.358 | -- | -- | -- | 0.55 | 5.33 | -- | -- | -- | -- |
| 72.66 | 0.397 | 7.43 | 0.16 | -- | 0.707 | -- | -- | 0.33 | -- | 22.06 | 1397 | -- | -- |
| 66.4 | 0.38 | 7.43 | -- | 0.376 | 0.802 | -- | -- | 0.309 | 5.84 | 21.49 | 2099 | -- | -- |
| 90.4 | 0.444 | 7.38 | 0.422 | -- | -- | -- | -- | 0.559 | -- | -- | -- | -- | -- |
| 88.16 | 0.439 | 7.38 | -- | 0.365 | -- | -- | -- | 0.505 | 5.28 | -- | -- | -- | -- |
| 72.84 | 0.397 | 7.43 | -- | -- | 0.813 | -- | -- | 0.317 | -- | 21.49 | 1384 | -- | -- |
| 95.1 | 0.455 | 7.39 | -- | -- | -- | -- | -- | 0.512 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 3 | 56.99 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 5 | 58.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 16 | 59.17 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 22 | 59.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 24 | 59.72 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 34 | 60.32 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 18 |
| 39 | 60.48 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 16 |
| 43 | 60.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 48 | 60.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 19 |
| 51 | 60.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 84 | 61.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 140 | 61.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 218 | 62.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 5 |
| 220 | 62.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 221 | 62.96 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 17 |
| 227 | 63.05 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 228 | 63.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 275 | 63.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 322 | 63.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 387 | 64.29 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 393 | 64.33 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 9 |
| 395 | 64.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 419 | 64.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 420 | 64.45 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 429 | 64.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 431 | 64.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 432 | 64.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 434 | 64.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 435 | 64.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 436 | 64.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 437 | 64.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 462 | 64.62 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 19 |
| 496 | 64.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 498 | 64.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 503 | 64.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 509 | 64.89 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 510 | 64.89 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 520 | 64.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 524 | 64.93 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 529 | 64.95 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 537 | 64.99 | wind | 9 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 540 | 64.99 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 568 | 65.11 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 586 | 65.16 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 588 | 65.17 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 608 | 65.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 612 | 65.25 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 625 | 65.29 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 631 | 65.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 643 | 65.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 667 | 65.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 671 | 65.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 675 | 65.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 686 | 65.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 692 | 65.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 734 | 65.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 749 | 65.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 753 | 65.56 | temperature | 25 | 30 | < th | dose independent | sin | 7 | NA |
| 796 | 65.62 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 800 | 65.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 805 | 65.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 806 | 65.63 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 837 | 65.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 854 | 65.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 862 | 65.68 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 871 | 65.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 883 | 65.72 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 885 | 65.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 887 | 65.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 912 | 65.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 991 | 65.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |