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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0589500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0172) R2 : 0.0112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0823 (0.0362) R2dN8 : 0.0145 R2N8 : 0.0112
σ : 0.323
deviance : 48.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.64 0.16 12.9 -0.594 0.503 -0.317 -0.651 -0.0271 -0.0275 11.5 49.93 4332 -- --
11.64 0.159 12.9 -0.592 0.502 -0.325 -0.649 -- -0.0278 11.5 49.64 4350 -- --
13.46 0.171 12.9 -0.606 0.504 -0.302 -- -0.0282 -0.0193 11.4 50 4376 -- --
13.43 0.171 12.9 -0.622 0.509 -0.307 -- -- -0.0266 11.4 50 4376 -- --
28.9 0.25 12.9 -0.66 -- -0.393 -- 0.0539 -0.0757 -- 52.11 3954 -- --
13.69 0.173 12.9 -0.729 0.52 -- -0.612 -- 0.0052 11.5 -- -- -- --
15.3 0.183 12.9 -0.754 0.523 -- -- -- 0.00248 11.4 -- -- -- --
28.89 0.25 12.9 -0.659 -- -0.394 -- -- -0.0756 -- 52.98 3962 -- --
22.55 0.221 12.8 -- 0.51 -0.445 -- -- 0.029 11.5 49 4376 -- --
32.46 0.266 12.9 -0.768 -- -- -- -- -0.00288 -- -- -- -- --
30.29 0.257 12.8 -- 0.531 -- -- -- 0.0865 11.5 -- -- -- --
36.93 0.283 12.9 -- -- -0.724 -- -- -0.0278 -- 50.51 4049 -- --
48.01 0.323 12.8 -- -- -- -- -- 0.0823 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.25 temperature 10.0 270 > th dose dependent rect. 19 8
2 10.39 wind 5.0 270 < th dose independent rect. 19 8
4 10.58 temperature 10.0 30 > th dose dependent rect. 21 8
21 10.79 wind 9.0 270 < th dose dependent rect. 19 8
23 10.82 precipitation 0.1 270 < th dose independent rect. 19 8
24 10.82 precipitation 0.1 270 < th dose dependent rect. 19 8
27 10.87 humidity 60.0 270 > th dose independent rect. 19 8
30 10.88 temperature 10.0 270 > th dose independent rect. 19 8
31 10.88 temperature 30.0 270 < th dose independent rect. 19 8
33 10.88 atmosphere 995.0 270 > th dose independent rect. 19 8
34 10.88 radiation 1.0 270 < th dose independent rect. 19 8
39 10.88 temperature 10.0 270 > th dose independent rect. 3 16
40 10.88 atmosphere 995.0 270 > th dose independent rect. 3 16
41 10.88 atmosphere 1015.0 270 < th dose independent rect. 3 16
42 10.88 precipitation 0.1 270 < th dose independent rect. 3 16
44 10.88 radiation 1.0 270 < th dose dependent rect. 19 8
50 10.88 precipitation 0.1 270 < th dose dependent rect. 3 16
57 10.95 wind 9.0 30 < th dose dependent rect. 21 8
59 10.97 radiation 30.0 90 < th dose independent rect. 16 17
64 11.00 wind 5.0 30 < th dose independent rect. 21 8
65 11.00 humidity 50.0 270 > th dose independent rect. 7 8
67 11.01 wind 9.0 270 < th dose independent rect. 3 16
68 11.01 temperature 15.0 90 > th dose independent rect. 16 17
77 11.03 atmosphere 995.0 270 > th dose dependent rect. 14 6
79 11.04 humidity 50.0 270 > th dose independent rect. 20 18
83 11.05 humidity 80.0 30 > th dose independent rect. 21 8
91 11.07 atmosphere 995.0 270 > th dose independent rect. 14 6
92 11.07 atmosphere 1015.0 270 < th dose independent rect. 19 8
93 11.07 precipitation 0.1 30 < th dose independent rect. 21 8
96 11.07 humidity 50.0 270 > th dose dependent rect. 19 8
97 11.07 humidity 50.0 30 > th dose dependent rect. 21 8
98 11.07 precipitation 0.1 30 < th dose dependent rect. 21 8
99 11.07 radiation 40.0 90 < th dose dependent rect. 16 17
100 11.08 humidity 70.0 270 > th dose independent rect. 1 8
105 11.09 temperature 15.0 270 > th dose independent rect. 14 6
108 11.09 humidity 50.0 270 > th dose independent rect. 9 16
109 11.09 atmosphere 995.0 270 > th dose independent rect. 15 16
111 11.09 precipitation 0.1 270 < th dose independent rect. 20 18
113 11.09 humidity 50.0 270 > th dose dependent rect. 1 8
114 11.09 precipitation 0.1 270 < th dose dependent rect. 20 18
115 11.10 temperature 20.0 10 > th dose independent rect. 22 7
118 11.10 wind 9.0 270 < th dose independent rect. 20 18
122 11.11 temperature 15.0 270 > th dose independent rect. 13 8
127 11.11 radiation 1.0 30 < th dose dependent rect. 21 8
128 11.12 wind 1.0 270 > th dose independent rect. 14 6
131 11.12 temperature 10.0 30 > th dose independent rect. 21 8
132 11.12 temperature 30.0 30 < th dose independent rect. 21 8
133 11.12 humidity 50.0 30 > th dose independent rect. 21 8
136 11.12 atmosphere 995.0 30 > th dose independent rect. 21 8
137 11.12 radiation 1.0 30 < th dose independent rect. 21 8
142 11.12 temperature 10.0 30 > th dose independent rect. 5 16
144 11.12 atmosphere 1015.0 30 < th dose independent rect. 5 16
155 11.13 wind 9.0 90 < th dose independent rect. 9 7
156 11.13 humidity 50.0 90 > th dose independent rect. 9 7
157 11.13 wind 9.0 270 < th dose independent rect. 7 8
167 11.14 atmosphere 1015.0 270 < th dose independent rect. 14 6
168 11.14 precipitation 0.1 270 < th dose independent rect. 14 6
170 11.14 atmosphere 995.0 30 > th dose independent rect. 5 16
171 11.14 temperature 10.0 270 > th dose independent rect. 20 18
172 11.14 atmosphere 995.0 270 > th dose independent rect. 20 18
173 11.14 atmosphere 995.0 90 > th dose dependent rect. 16 5
174 11.14 precipitation 0.1 270 < th dose dependent rect. 14 6
178 11.15 temperature 10.0 270 > th dose independent rect. 7 8
179 11.15 atmosphere 1015.0 270 < th dose independent rect. 7 8
180 11.15 precipitation 0.1 270 < th dose independent rect. 7 8
184 11.15 precipitation 0.1 270 < th dose dependent rect. 7 8
186 11.16 atmosphere 995.0 90 > th dose independent rect. 16 5
188 11.16 temperature 10.0 90 > th dose independent rect. 9 7
190 11.16 atmosphere 1015.0 90 < th dose independent rect. 9 7
191 11.16 precipitation 0.1 90 < th dose independent rect. 9 7
209 11.16 precipitation 0.1 30 < th dose independent rect. 5 16
216 11.16 precipitation 0.1 90 < th dose dependent rect. 9 7
221 11.16 precipitation 0.1 30 < th dose dependent rect. 5 16
229 11.17 wind 9.0 90 < th dose independent rect. 16 17
231 11.17 atmosphere 1015.0 270 < th dose independent rect. 20 18
233 11.17 humidity 50.0 270 > th dose independent rect. 18 22
245 11.18 wind 9.0 30 < th dose independent rect. 5 16
265 11.19 wind 1.0 270 > th dose independent rect. 13 8
268 11.19 atmosphere 995.0 270 > th dose independent rect. 7 8
275 11.19 atmosphere 995.0 270 > th dose dependent rect. 16 2
285 11.20 radiation 40.0 270 < th dose independent rect. 14 5
286 11.20 wind 9.0 270 < th dose independent rect. 14 6
289 11.20 atmosphere 995.0 90 > th dose independent rect. 9 7
299 11.20 radiation 40.0 10 < th dose dependent rect. 16 17
305 11.21 atmosphere 1000.0 10 > th dose independent rect. 16 6
307 11.21 atmosphere 1015.0 30 < th dose independent rect. 21 8
329 11.22 wind 9.0 270 < th dose independent rect. 9 16
330 11.22 wind 9.0 270 < th dose independent rect. 21 16
331 11.22 precipitation 0.1 270 < th dose independent rect. 15 16
341 11.22 precipitation 0.1 270 < th dose dependent rect. 15 16
362 11.24 wind 1.0 90 > th dose independent rect. 16 5
363 11.24 temperature 10.0 90 > th dose independent rect. 16 5
366 11.24 atmosphere 1010.0 90 < th dose independent rect. 16 5
368 11.24 radiation 30.0 90 < th dose independent rect. 16 5
392 11.25 wind 9.0 90 < th dose independent rect. 16 5
416 11.25 atmosphere 995.0 10 > th dose dependent rect. 16 5
428 11.26 temperature 30.0 270 < th dose independent rect. 1 8
430 11.26 precipitation 0.1 270 < th dose independent rect. 9 16
438 11.26 precipitation 0.1 270 < th dose dependent rect. 9 16
444 11.27 temperature 10.0 1440 > th dose independent rect. 10 7
460 11.27 temperature 10.0 270 > th dose independent rect. 21 16
461 11.27 atmosphere 995.0 270 > th dose independent rect. 21 16
465 11.27 temperature 10.0 1440 > th dose independent rect. 17 17
483 11.28 precipitation 0.1 90 < th dose independent rect. 16 5
486 11.28 wind 9.0 270 < th dose independent rect. 1 8
487 11.28 temperature 10.0 270 > th dose independent rect. 1 8
495 11.28 atmosphere 995.0 270 > th dose independent rect. 1 8
497 11.28 atmosphere 1015.0 270 < th dose independent rect. 1 8
503 11.28 temperature 10.0 270 > th dose independent rect. 9 16
512 11.28 precipitation 0.1 90 < th dose dependent rect. 16 5
529 11.29 precipitation 0.1 270 < th dose independent rect. 1 8
535 11.29 atmosphere 1015.0 10 < th dose independent rect. 22 18
536 11.29 radiation 30.0 30 < th dose independent rect. 16 19
541 11.29 precipitation 0.1 270 < th dose dependent rect. 1 8
544 11.30 atmosphere 995.0 270 > th dose independent rect. 16 2
571 11.30 radiation 1.0 10 < th dose dependent rect. 21 17
591 11.32 wind 1.0 90 > th dose independent rect. 9 7
608 11.33 wind 1.0 10 > th dose independent rect. 16 6
623 11.33 wind 9.0 270 < th dose independent rect. 18 22
666 11.35 temperature 10.0 10 > th dose independent rect. 16 5
670 11.35 atmosphere 1010.0 10 < th dose independent rect. 16 5
674 11.35 radiation 20.0 10 < th dose independent rect. 16 5
691 11.35 humidity 50.0 10 > th dose independent rect. 16 17
693 11.35 temperature 10.0 10 > th dose independent rect. 22 18
700 11.35 radiation 40.0 10 < th dose dependent rect. 16 5
712 11.36 wind 1.0 30 > th dose independent rect. 5 16
734 11.37 atmosphere 995.0 10 > th dose independent rect. 22 18
737 11.37 precipitation 0.1 270 < th dose independent rect. 18 22
738 11.37 radiation 40.0 90 < th dose dependent rect. 15 6
740 11.37 precipitation 0.1 270 < th dose dependent rect. 18 22
754 11.38 wind 1.0 270 > th dose independent rect. 3 16
756 11.38 radiation 1.0 10 < th dose independent rect. 21 17
772 11.39 radiation 30.0 270 < th dose independent rect. 16 2
806 11.39 radiation 1.0 10 < th dose dependent rect. 21 15
809 11.40 temperature 10.0 270 > th dose independent rect. 16 2
811 11.40 atmosphere 1010.0 270 < th dose independent rect. 16 2
831 11.40 temperature 10.0 270 > th dose independent rect. 18 22
837 11.40 radiation 1.0 10 < th dose dependent rect. 21 11
844 11.41 precipitation 0.1 270 < th dose independent rect. 16 2
846 11.41 temperature 10.0 1440 > th dose independent rect. 17 5
849 11.41 radiation 30.0 1440 < th dose independent rect. 17 5
866 11.41 radiation 40.0 270 < th dose independent rect. 1 8
874 11.41 temperature 20.0 10 > th dose independent rect. 22 18
876 11.41 temperature 10.0 1440 > th dose independent rect. 22 19
880 11.41 precipitation 0.1 270 < th dose dependent rect. 16 2
896 11.42 wind 1.0 270 > th dose independent rect. 16 2
936 11.43 radiation 1.0 270 > th dose independent rect. 7 8
954 11.44 wind 9.0 270 < th dose independent rect. 16 2
974 11.45 temperature 25.0 270 < th dose independent rect. 1 6
976 11.45 wind 1.0 270 > th dose independent rect. 7 8
978 11.45 humidity 50.0 4320 > th dose independent rect. 18 16
998 11.46 humidity 50.0 10 > th dose independent rect. 16 5