BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0589500 Os01g0589500|AB110176
         (244 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09830.1  | chr4:6188866-6190591 FORWARD LENGTH=192            159   9e-40
AT5G64780.1  | chr5:25900700-25901955 REVERSE LENGTH=176          127   5e-30

>AT4G09830.1 | chr4:6188866-6190591 FORWARD LENGTH=192
          Length = 191

 Score =  159 bits (403), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 126/197 (63%), Gaps = 16/197 (8%)

Query: 45  MARKRKTDAAPRLDEADRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQW 104
           M +KRK+ A   LDE DRT+Y++F  AANSLSQLYTQ+M  QKLSFQAGERH LEKL+QW
Sbjct: 1   MGKKRKSTAT-SLDEVDRTVYASFRTAANSLSQLYTQSMNHQKLSFQAGERHGLEKLYQW 59

Query: 105 ILRKHEEESRLTAADIMSHIQHELDYGGNDPHVS-------PRVHQHSANPFANSSIQPS 157
           I R+ E  SR+T  DI+++IQ+EL+   ++P +S       P +H        N  +  +
Sbjct: 60  IWRQQEGGSRVTPMDIVNYIQNELECCIDEPPISPRAPPPQPTMH------VTNPGLMTT 113

Query: 158 AGSYGQATVGFAPRPSISDQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAG 217
           +G+     V         +Q+KN++FSNALSSP+RRSLQ+Y + QG    G    T S+ 
Sbjct: 114 SGTSFPTAVPVVRSEQCENQAKNSVFSNALSSPIRRSLQNYQIPQGGYTSG--GTTRSSE 171

Query: 218 QNRETNSGGSNDTSMDM 234
            NR +NS GS D+SMDM
Sbjct: 172 VNRGSNSPGSIDSSMDM 188



>AT5G64780.1 | chr5:25900700-25901955 REVERSE LENGTH=176
          Length = 175

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 17/181 (9%)

Query: 45  MARKRKTDAAPRLDEADRTLYSTFCGAANSLSQLYTQAMAQQKLSFQAGERHSLEKLHQW 104
           M +KRK++A  RLDE DRT+Y  F GAANSLSQLYT AM  Q++SF AGER  +EKL+QW
Sbjct: 1   MGKKRKSEAT-RLDEVDRTMYGAFRGAANSLSQLYTHAMNHQRVSFLAGERRGMEKLYQW 59

Query: 105 ILRKHEEESRLTAADIMSHIQHELDYGGNDPHVSPRVHQHSANPFANSSIQPSAGSYGQA 164
           I+R+ E+ +R++ ADI +++Q+ L+Y   +  +   + +   + FA  ++  S       
Sbjct: 60  IVRQEEQGTRVSTADITTYLQNALEYEPEETSIPLPMQEFYQHQFAPPNVNTS------- 112

Query: 165 TVGFAPRPSIS-------DQSKNTIFSNALSSPVRRSLQSYHLTQGSGNGGRNAETNSAG 217
            V   P   I+       +Q K  I  N LSSPVRR+LQ ++L +   +G  N   NS G
Sbjct: 113 -VAHVPSSHIAQQQHYDCNQEKLLIPPNGLSSPVRRTLQDFNLCEAE-SGNNNYNPNSTG 170

Query: 218 Q 218
           +
Sbjct: 171 E 171



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.123    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,995,669
Number of extensions: 200717
Number of successful extensions: 693
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)