BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0344900 Os09g0344900|AK060053
         (227 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0344900  Zinc finger, RING-type domain containing protein    478   e-135
Os05g0488800  Zinc finger, RING-type domain containing protein     72   4e-13
Os01g0276600  Zinc finger, RING-type domain containing protein     70   1e-12
Os03g0812200  Zinc finger, RING-type domain containing protein     69   2e-12

>Os09g0344900 Zinc finger, RING-type domain containing protein
          Length = 227

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MSGRRPDGSYGPEYGPQPPEHEYGLYHHWPSRGRAPWPLYHGRDYPWRSLEQRVRREPFV 60
           MSGRRPDGSYGPEYGPQPPEHEYGLYHHWPSRGRAPWPLYHGRDYPWRSLEQRVRREPFV
Sbjct: 1   MSGRRPDGSYGPEYGPQPPEHEYGLYHHWPSRGRAPWPLYHGRDYPWRSLEQRVRREPFV 60

Query: 61  FSSRIRHINGGGNPRPRQEDPGLTDAEFKKAMEQLNKQAYRSLDPHKMVESNRGGRNHAK 120
           FSSRIRHINGGGNPRPRQEDPGLTDAEFKKAMEQLNKQAYRSLDPHKMVESNRGGRNHAK
Sbjct: 61  FSSRIRHINGGGNPRPRQEDPGLTDAEFKKAMEQLNKQAYRSLDPHKMVESNRGGRNHAK 120

Query: 121 SARSKPAPNNTEEEKACTICLETFLAGEQVVATPCNHIFHQECITPWVKGHGNCPVCRFA 180
           SARSKPAPNNTEEEKACTICLETFLAGEQVVATPCNHIFHQECITPWVKGHGNCPVCRFA
Sbjct: 121 SARSKPAPNNTEEEKACTICLETFLAGEQVVATPCNHIFHQECITPWVKGHGNCPVCRFA 180

Query: 181 LCERNTVSDNSQSGVGEVEVDLDLLEMMRAMEEIFSRVTFSNFMPYN 227
           LCERNTVSDNSQSGVGEVEVDLDLLEMMRAMEEIFSRVTFSNFMPYN
Sbjct: 181 LCERNTVSDNSQSGVGEVEVDLDLLEMMRAMEEIFSRVTFSNFMPYN 227



>Os05g0488800 Zinc finger, RING-type domain containing protein
          Length = 323

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 70  GGGNPRPRQEDPGLTDAEFKKAMEQLNKQAYRSLDPHKMVESNRGGRNHAKSARSKPAPN 129
           G G+      D GL +     A   L  Q     DP      +R G   AK    +  P 
Sbjct: 137 GQGDQGGSTNDDGLLEEYVLGAGLSLLLQHLAESDP------SRNGTPPAKKEAVEALPT 190

Query: 130 -NTEEEKACTICLETFLAGEQVVATPCNHIFHQECITPWVKGHGNCPVCRFALCERNTVS 188
              EE  +C++CL+    G Q    PC H FH  CI PW++ H +CPVCRF L    T  
Sbjct: 191 VKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFELPSEETKD 250

Query: 189 DNSQSGVGEVE 199
            N  S +G VE
Sbjct: 251 LNEPSNIGRVE 261



>Os01g0276600 Zinc finger, RING-type domain containing protein
          Length = 329

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%)

Query: 134 EKACTICLETFLAGEQVVATPCNHIFHQECITPWVKGHGNCPVCRFAL 181
           + AC +CLE + AGE+    PC H FH +CI PW+K H +CPVCRF L
Sbjct: 210 DSACAVCLEDYAAGERATEMPCRHRFHAKCIVPWLKMHSSCPVCRFQL 257



>Os03g0812200 Zinc finger, RING-type domain containing protein
          Length = 369

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 112 NRGGRNHAKSARSKPAPN-NTEEEKACTICLETFLAGEQVVATPCNHIFHQECITPWVKG 170
           NR G   AK    +  P  N +E   C++CLE F  G +    PC H FH +CI PW++ 
Sbjct: 229 NRSGTPPAKKEAVEALPTVNIQEVLGCSVCLEDFEMGTEAKEMPCQHKFHSQCILPWLEL 288

Query: 171 HGNCPVCRFAL 181
           H +CP+CRF L
Sbjct: 289 HSSCPICRFQL 299



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,677,097
Number of extensions: 455816
Number of successful extensions: 1658
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 7
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)