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Os09g0344900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.66 (0.0268) R2 : 0.561
β1 : -0.74 (0.0979) R2dD : 0.057 R2D : 0.0519
β2 : 1.46 (0.0635) R2dC : 0.509 R2C : 0.502
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0223 (0.0571) R2dN8 : 0.000198 R2N8 : -0.000301
σ : 0.503
deviance : 115.27
__
_____
C
peak time of C : 23.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.99 0.463 9.63 -0.698 0.501 1 0.547 -0.496 0.0683 22.1 22.13 19 -- --
97.36 0.46 9.63 -0.701 0.491 1.01 0.0684 -- 0.0687 21.9 22.16 18 -- --
97.38 0.46 9.62 -0.707 0.498 1.03 -- -0.102 0.0803 21.9 22.74 23 -- --
97.38 0.46 9.63 -0.705 0.489 1.02 -- -- 0.0677 21.9 22.18 18 -- --
103.1 0.473 9.6 -0.657 -- 1.34 -- -0.116 0.0989 -- 21.95 18 -- --
115.12 0.503 9.66 -0.732 1.46 -- 0.182 -- 0.023 23.4 -- -- -- --
115.27 0.503 9.66 -0.74 1.46 -- -- -- 0.0223 23.4 -- -- -- --
103.11 0.473 9.61 -0.7 -- 1.34 -- -- 0.0781 -- 21.77 18 -- --
110.46 0.49 9.61 -- 0.477 1.05 -- -- 0.152 21.8 22.62 20 -- --
248.34 0.736 9.62 -0.702 -- -- -- -- 0.037 -- -- -- -- --
129.68 0.533 9.64 -- 1.45 -- -- -- 0.105 23.4 -- -- -- --
115.9 0.501 9.6 -- -- 1.34 -- -- 0.144 -- 21.81 15 -- --
261.33 0.755 9.6 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.81 wind 1.0 14400 < th dose dependent rect. 1 1
2 91.62 radiation 1.0 14400 > th dose independent rect. 15 1
3 91.62 radiation 1.0 14400 < th dose independent rect. 15 1
4 91.74 radiation 20.0 30 < th dose dependent sin 3 NA
5 91.83 wind 1.0 14400 < th dose dependent rect. 22 11
11 92.16 wind 1.0 14400 > th dose independent rect. 5 3
12 92.18 wind 1.0 14400 < th dose dependent rect. 5 3
23 92.47 wind 1.0 14400 < th dose independent rect. 5 4
25 92.48 wind 1.0 14400 > th dose independent rect. 24 2
28 92.57 wind 1.0 14400 < th dose independent rect. 24 2
30 92.60 wind 1.0 14400 < th dose dependent rect. 22 14
58 93.09 radiation 1.0 43200 < th dose dependent rect. 20 5
61 93.15 wind 1.0 14400 < th dose dependent sin 8 NA
66 93.18 wind 1.0 14400 > th dose independent rect. 22 4
68 93.22 wind 1.0 43200 < th dose independent rect. 12 1
69 93.22 humidity 60.0 14400 > th dose independent rect. 3 6
70 93.22 humidity 60.0 14400 > th dose independent rect. 1 8
79 93.28 radiation 20.0 30 < th dose independent rect. 24 19
82 93.30 wind 1.0 14400 < th dose independent rect. 22 11
88 93.33 humidity 60.0 14400 > th dose independent rect. 20 13
94 93.40 humidity 60.0 14400 > th dose independent rect. 6 3
97 93.42 wind 1.0 14400 < th dose independent rect. 22 5
107 93.48 humidity 70.0 43200 > th dose independent rect. 14 2
110 93.49 wind 1.0 14400 > th dose independent rect. 5 9
115 93.55 wind 1.0 14400 < th dose independent rect. 5 9
118 93.57 humidity 60.0 14400 > th dose dependent rect. 2 5
121 93.59 humidity 50.0 14400 > th dose dependent rect. 5 1
128 93.62 radiation 10.0 270 < th dose dependent rect. 23 15
129 93.63 wind 1.0 14400 < th dose independent rect. 22 16
154 93.78 radiation 10.0 90 > th dose independent sin 4 NA
157 93.80 wind 1.0 14400 < th dose dependent rect. 5 7
158 93.80 wind 1.0 14400 < th dose dependent rect. 5 9
167 93.83 wind 1.0 14400 > th dose independent rect. 22 11
168 93.83 wind 1.0 14400 > th dose independent rect. 22 16
170 93.84 humidity 80.0 43200 < th dose independent rect. 18 1
210 94.04 precipitation 0.1 43200 > th dose dependent rect. 2 1
217 94.07 radiation 1.0 43200 < th dose dependent rect. 20 7
232 94.14 humidity 60.0 14400 < th dose independent rect. 20 13
242 94.16 radiation 20.0 90 < th dose dependent rect. 1 15
243 94.17 wind 1.0 14400 < th dose independent rect. 22 1
252 94.20 radiation 20.0 30 < th dose independent rect. 2 17
255 94.21 atmosphere 1015.0 43200 > th dose independent rect. 20 1
270 94.27 wind 1.0 14400 < th dose independent rect. 5 22
273 94.28 wind 1.0 14400 > th dose independent rect. 4 22
285 94.32 atmosphere 1015.0 43200 > th dose independent rect. 19 3
287 94.33 humidity 80.0 43200 > th dose independent rect. 18 2
288 94.33 atmosphere 1015.0 43200 > th dose independent rect. 18 5
295 94.34 wind 1.0 14400 > th dose independent rect. 18 19
306 94.38 humidity 50.0 14400 > th dose independent rect. 10 2
324 94.42 radiation 1.0 14400 < th dose independent rect. 9 8
335 94.44 humidity 60.0 14400 < th dose independent rect. 6 3
340 94.44 atmosphere 1015.0 43200 < th dose independent rect. 17 7
351 94.46 humidity 70.0 43200 < th dose independent rect. 15 1
374 94.50 precipitation 0.1 43200 > th dose independent rect. 2 1
394 94.52 wind 1.0 14400 < th dose dependent rect. 4 23
401 94.54 precipitation 0.1 43200 < th dose independent rect. 2 1
402 94.54 atmosphere 1015.0 43200 < th dose independent rect. 19 2
404 94.54 precipitation 0.1 43200 < th dose dependent rect. 2 1
416 94.57 humidity 50.0 14400 > th dose dependent rect. 2 1
425 94.59 humidity 90.0 10 < th dose dependent sin 4 NA
438 94.62 atmosphere 1015.0 43200 > th dose independent rect. 22 1
439 94.62 atmosphere 1015.0 43200 < th dose independent rect. 23 1
466 94.65 radiation 20.0 90 < th dose dependent rect. 24 19
471 94.66 humidity 50.0 14400 < th dose dependent rect. 11 1
472 94.67 precipitation 0.1 43200 > th dose independent rect. 23 1
478 94.67 precipitation 0.1 43200 > th dose dependent rect. 23 1
493 94.71 precipitation 0.1 43200 < th dose independent rect. 23 1
498 94.71 precipitation 0.1 43200 < th dose dependent rect. 23 1
504 94.72 humidity 60.0 10 > th dose dependent rect. 24 17
540 94.78 humidity 50.0 14400 < th dose independent rect. 11 1
552 94.80 wind 1.0 43200 > th dose independent rect. 12 1
584 94.84 atmosphere 1015.0 43200 < th dose independent sin 15 NA
612 94.87 atmosphere 1015.0 43200 > th dose independent sin 15 NA
653 94.90 radiation 20.0 30 < th dose independent rect. 24 17
656 94.91 wind 1.0 14400 < th dose independent rect. 5 18
658 94.91 humidity 90.0 14400 < th dose dependent rect. 6 1
709 94.99 wind 1.0 14400 < th dose independent sin 4 NA
759 95.04 humidity 60.0 14400 < th dose dependent rect. 8 1
762 95.04 wind 1.0 14400 < th dose dependent rect. 11 22
766 95.05 humidity 50.0 14400 > th dose independent rect. 3 9
767 95.05 humidity 50.0 14400 > th dose independent rect. 1 11
789 95.08 wind 1.0 14400 > th dose independent sin 3 NA
794 95.08 radiation 10.0 270 < th dose dependent rect. 23 11
808 95.09 humidity 50.0 10 > th dose dependent rect. 24 19
827 95.12 humidity 50.0 14400 > th dose independent rect. 6 6
899 95.19 humidity 70.0 14400 < th dose dependent rect. 21 12
913 95.20 humidity 60.0 10 > th dose dependent rect. 2 15
922 95.22 radiation 1.0 43200 > th dose independent rect. 4 2
936 95.22 wind 1.0 14400 < th dose dependent no NA NA
962 95.25 radiation 1.0 43200 < th dose independent rect. 22 8
987 95.28 radiation 1.0 43200 < th dose independent rect. 4 2
1000 95.29 humidity 70.0 14400 < th dose dependent rect. 6 3