BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0297100 Os09g0297100|AK104965
         (148 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0297100  Similar to CROC-1-like protein (Fragment)           276   5e-75
Os12g0605400  Similar to CROC-1-like protein (Fragment)           241   2e-64
Os04g0684800  Similar to CROC-1-like protein (Fragment)           224   1e-59
Os03g0712300  Similar to CROC-1-like protein (Fragment)           210   3e-55

>Os09g0297100 Similar to CROC-1-like protein (Fragment)
          Length = 148

 Score =  276 bits (705), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/148 (88%), Positives = 131/148 (88%)

Query: 1   MTLXXXXXXXXXXXPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHN 60
           MTL           PRNFR      RGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHN
Sbjct: 1   MTLGSSGAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHN 60

Query: 61  SVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTM 120
           SVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTM
Sbjct: 61  SVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTM 120

Query: 121 ETILTQLKKEMATPQNRKLVQPPEGTFF 148
           ETILTQLKKEMATPQNRKLVQPPEGTFF
Sbjct: 121 ETILTQLKKEMATPQNRKLVQPPEGTFF 148



>Os12g0605400 Similar to CROC-1-like protein (Fragment)
          Length = 146

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 109/134 (81%), Positives = 119/134 (88%)

Query: 15  PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFC 74
           PRNFR      RGEKGIGDG+VSYGMDDADDIYMRSWTGTIIGPHN+VHEGRIYQLKLFC
Sbjct: 13  PRNFRLLEELERGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFC 72

Query: 75  DKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMATP 134
           DKDYP++PP+V+FHSRINM+CVN E G VD RKF +L+NW+REYTME ILTQLKKEMA  
Sbjct: 73  DKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEAILTQLKKEMAAS 132

Query: 135 QNRKLVQPPEGTFF 148
            NRKLVQPPEGTFF
Sbjct: 133 HNRKLVQPPEGTFF 146



>Os04g0684800 Similar to CROC-1-like protein (Fragment)
          Length = 151

 Score =  224 bits (572), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/124 (85%), Positives = 114/124 (91%), Gaps = 1/124 (0%)

Query: 26  RGEKGIGDGTVSYGMDD-ADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPS 84
           RGEKGIGDGTVSYGMDD  DDI+MRSWTGTIIGP NSVHEGRIYQLKLFCDKDYP+KPP+
Sbjct: 28  RGEKGIGDGTVSYGMDDDGDDIFMRSWTGTIIGPLNSVHEGRIYQLKLFCDKDYPDKPPT 87

Query: 85  VRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMATPQNRKLVQPPE 144
           VRFHSRINM CVN +TG V+S+KF +LANWQREYTME ILTQLKKEMA P +RKLVQPPE
Sbjct: 88  VRFHSRINMPCVNPDTGLVESKKFHMLANWQREYTMENILTQLKKEMAAPHSRKLVQPPE 147

Query: 145 GTFF 148
           GTFF
Sbjct: 148 GTFF 151



>Os03g0712300 Similar to CROC-1-like protein (Fragment)
          Length = 161

 Score =  210 bits (534), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/131 (74%), Positives = 109/131 (83%)

Query: 15  PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFC 74
           PRNFR      RGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGP N+VHEGRIYQLKLFC
Sbjct: 13  PRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNTVHEGRIYQLKLFC 72

Query: 75  DKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMATP 134
           D DYP++PP+VRF +RINMSCVN ETG V+   F +L NWQRE+TM+ IL  LKKEM+ P
Sbjct: 73  DTDYPDRPPTVRFQTRINMSCVNQETGMVEPSLFPMLGNWQREHTMQDILIGLKKEMSAP 132

Query: 135 QNRKLVQPPEG 145
           QNR+L QP +G
Sbjct: 133 QNRRLHQPHDG 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,202,072
Number of extensions: 204144
Number of successful extensions: 358
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 4
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)