BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0286300 Os09g0286300|Os09g0286300
(484 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0286300 Protein of unknown function DUF566 family protein 495 e-140
Os03g0206100 Protein of unknown function DUF566 family protein 90 4e-18
Os09g0422600 Protein of unknown function DUF566 family protein 85 1e-16
Os07g0115600 77 4e-14
Os03g0762900 Protein of unknown function DUF566 family protein 69 8e-12
>Os09g0286300 Protein of unknown function DUF566 family protein
Length = 484
Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust.
Identities = 278/484 (57%), Positives = 278/484 (57%)
Query: 1 MAIAAXXXXXXXXQRTDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSRYLXXXXXX 60
MAIAA QRTDM VSSRYL
Sbjct: 1 MAIAAPPPPPPPPQRTDMPAAADLPPPPPPLAIPLPETTRRPRRRTREVSSRYLSSTTPG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXFANENHXXXXXXXSTASRRRAVLKLFDDXXXX 120
FANENH STASRRRAVLKLFDD
Sbjct: 61 PVPSSPRLSTSSSRTPSPRAHRPRAATPFANENHPPPPPPPSTASRRRAVLKLFDDGSGG 120
Query: 121 XXXXXXXXXXXXXXXXLHXXXXXXXXXXXXXXXXXYPRMXXXXXXXXXXXXXXXXXXXXX 180
LH YPRM
Sbjct: 121 ANPRASAAAAAGTPRALHRSTSGPAAAAASTARRGYPRMPTPARAASCPSSSSAAAADDA 180
Query: 181 XXXXXXXXXXXFTDLSEVDGIALPAAPCESPPLLGPAXXXXXXXXXXXXXXVPESGGSVR 240
FTDLSEVDGIALPAAPCESPPLLGPA VPESGGSVR
Sbjct: 181 ASCCSSDTGSTFTDLSEVDGIALPAAPCESPPLLGPASCRGGRLSSELRSSVPESGGSVR 240
Query: 241 ALNPLCYRSLNSALSGCXXXXXXXXXXXXXXXQPHGVKAAESKKVAMIGGRKVPGKQEDV 300
ALNPLCYRSLNSALSGC QPHGVKAAESKKVAMIGGRKVPGKQEDV
Sbjct: 241 ALNPLCYRSLNSALSGCPAPAGKAAVNAARPPQPHGVKAAESKKVAMIGGRKVPGKQEDV 300
Query: 301 HQLRMLENSYLQYRFMNXXXXXXXXXXXXXXXXXLFGLEERITALRVSVAXXXXXXXXXX 360
HQLRMLENSYLQYRFMN LFGLEERITALRVSVA
Sbjct: 301 HQLRMLENSYLQYRFMNARAEAVARAKASVAEKSLFGLEERITALRVSVAEKKMEVERMR 360
Query: 361 XXQTLRSVVDAQVPHLDQWCDLEGDHSSSLIGLTSALYNSSLRLPVIGNVRANSEEITEV 420
QTLRSVVDAQVPHLDQWCDLEGDHSSSLIGLTSALYNSSLRLPVIGNVRANSEEITEV
Sbjct: 361 REQTLRSVVDAQVPHLDQWCDLEGDHSSSLIGLTSALYNSSLRLPVIGNVRANSEEITEV 420
Query: 421 LNSSVQLLEPVSSCVKNFLPKVQEVDDVAAKLAQVIASERVAIEECGNLLYQAHNLQKIQ 480
LNSSVQLLEPVSSCVKNFLPKVQEVDDVAAKLAQVIASERVAIEECGNLLYQAHNLQKIQ
Sbjct: 421 LNSSVQLLEPVSSCVKNFLPKVQEVDDVAAKLAQVIASERVAIEECGNLLYQAHNLQKIQ 480
Query: 481 RRLV 484
RRLV
Sbjct: 481 RRLV 484
>Os03g0206100 Protein of unknown function DUF566 family protein
Length = 589
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 93/173 (53%)
Query: 298 EDVHQLRMLENSYLQYRFMNXXXXXXXXXXXXXXXXXLFGLEERITALRVSVAXXXXXXX 357
E+ H+LR+L+N +LQ+R +N L + I+ LR +V+
Sbjct: 361 EEAHRLRLLDNRHLQWRCINARTDAALLVQSFNAEKTLHSAWKEISKLRDNVSSKRSKLQ 420
Query: 358 XXXXXQTLRSVVDAQVPHLDQWCDLEGDHSSSLIGLTSALYNSSLRLPVIGNVRANSEEI 417
L +++ Q+ +LD+W +E HSS+L AL S+LRLPV+G +A+++ +
Sbjct: 421 LLKQKLKLFAILRRQIYYLDEWSHIEKHHSSALSAAIEALKASTLRLPVVGGAKADAQGV 480
Query: 418 TEVLNSSVQLLEPVSSCVKNFLPKVQEVDDVAAKLAQVIASERVAIEECGNLL 470
E +NS+V ++ ++S + L KV+ V ++LA++ E++ +++ +LL
Sbjct: 481 KEAVNSAVDVMHTMASSMCTLLSKVEGTSSVVSELAKLATQEQMLLDQSRDLL 533
>Os09g0422600 Protein of unknown function DUF566 family protein
Length = 579
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%)
Query: 290 GRKVPGKQEDVHQLRMLENSYLQYRFMNXXXXXXXXXXXXXXXXXLFGLEERITALRVSV 349
G+K + E++HQL + N YLQ+ F+N ++ + + LR V
Sbjct: 371 GKKNSSQIENIHQLHLSYNRYLQWIFVNAYAEDTMSFQKVTAESIIYNVLRNTSNLRDVV 430
Query: 350 AXXXXXXXXXXXXQTLRSVVDAQVPHLDQWCDLEGDHSSSLIGLTSALYNSSLRLPVIGN 409
L ++ Q+ +L+QW LE ++S SL T AL S+LRLPV
Sbjct: 431 NMRRIMVQCIQQELKLHGILKEQIDYLEQWPALEKENSISLFHATEALKASTLRLPVTSG 490
Query: 410 VRANSEEITEVLNSSVQLLEPVSSCVKNFLPKVQEVDDVAAKLAQVIASERVAIEECGNL 469
+A+ + ++S+V +++ + S V+ LPKV++ + ++L+ + E+ ++EC L
Sbjct: 491 AKADVVALKNAVSSAVDIMQGLGSAVRCMLPKVEDRTYLVSELSVIARQEKAMLDECREL 550
Query: 470 LYQAHNLQ 477
L A LQ
Sbjct: 551 LAMAAKLQ 558
>Os07g0115600
Length = 462
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
Query: 274 PHGVKAAESKKVAMIGGR-KVPGKQEDVHQLRMLENSYLQYRFMNXXXXXXXXXXXXXXX 332
P + + + + + GR + GK E+ HQLR+L N +LQ+R N
Sbjct: 229 PSPARCSATAAASAVPGRLQAQGKAEEEHQLRLLHNRHLQWRLANAVAGAAISAQELNAE 288
Query: 333 XXLFGLEERITALRVSVAXXXXXXXXXXXXQTLRSVVDAQVPHLDQWCDLEGDHSSSLIG 392
L G I + S+A + + + Q+ +L++W LE +++SL G
Sbjct: 289 KQLCGAWVSILGMSKSIALKKLELQLLRQNCKVMNTLKGQMAYLEEWSLLENKYANSLSG 348
Query: 393 LTSALYNSSLRLPVIGNVRANSEEITEVLNSSVQLLEPVSSCVKNFLPKVQEVDDVAAKL 452
AL + LRLPV A+ + + + S+V +++ + + + LPK+ + + ++L
Sbjct: 349 TVEALNATVLRLPVSDGAVADFQSVKNAVGSAVDVMQTMRNSMSYLLPKLARTNVLVSQL 408
Query: 453 AQVIASERVAIEECGNLL 470
+ + E+V + +C LL
Sbjct: 409 SIITRQEQVLMAQCRELL 426
>Os03g0762900 Protein of unknown function DUF566 family protein
Length = 615
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%)
Query: 301 HQLRMLENSYLQYRFMNXXXXXXXXXXXXXXXXXLFGLEERITALRVSVAXXXXXXXXXX 360
H LR+L N +LQ+R +N L +R SVA
Sbjct: 417 HLLRILCNRHLQWRCVNAQADAALAAQKMTAEKYLSDAWITTLGMRKSVALKRFQLQLFR 476
Query: 361 XXQTLRSVVDAQVPHLDQWCDLEGDHSSSLIGLTSALYNSSLRLPVIGNVRANSEEITEV 420
L +V+ Q+ L++W LE DH++SL G+ AL + L LPV +A+ +++
Sbjct: 477 NNWKLMTVLKGQMDFLEEWSFLERDHANSLSGIVEALTATILCLPVTDGAKADIQDVKNA 536
Query: 421 LNSSVQLLEPVSSCVKNFLPKVQEVDDVAAKLAQVIASERVAIEECGNLL 470
+ S+V +++ + S + L K+ + + LA++ ER +++ LL
Sbjct: 537 VGSAVDIMQTIGSSICTLLAKLSGTSILVSDLAKIATQERTLMDQSRELL 586
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,947,147
Number of extensions: 216680
Number of successful extensions: 532
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 5
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)