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Os03g0762900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF566 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.12 (0.0325) R2 : 0.804
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.32 (0.083) R2dC : 0.694 R2C : 0.671
β3 : -1.03 (0.0644) R2dE : 0.109 R2E : 0.0751
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.429 (0.0683) R2dN8 : 0.0215 R2N8 : 0.0175
σ : 0.609
deviance : 171.18
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_____
C
peak time of C : 20
E
wheather : radiation
threshold : 41.84
memory length : 53
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.25
open length of G : 16.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.72 0.596 8.13 -0.136 3.32 -1.02 -1.34 -1.07 -0.448 20 42.05 54 5.17 16.7
166.88 0.602 8.13 -0.138 3.31 -1.02 -1.23 -- -0.449 19.9 42.09 53 5.2 16.7
165.52 0.599 8.12 -0.0987 3.34 -1.03 -- -1.04 -0.424 19.9 41.82 53 5.23 16.6
170.96 0.609 8.12 -0.103 3.33 -1.04 -- -- -0.428 20 41.84 53 5.26 16.6
242.83 0.726 8.04 -0.0348 -- -2.64 -- 0.211 -0.442 -- 260.4 221 2.37 10.6
220.43 0.696 8.14 -0.14 3.32 -- -0.726 -- -0.481 20.9 -- -- -- --
222.19 0.698 8.14 -0.117 3.32 -- -- -- -0.482 21 -- -- -- --
241.12 0.723 8.05 -0.145 -- -2.55 -- -- -0.51 -- 304.3 221 2.33 10.5
171.18 0.609 8.12 -- 3.32 -1.03 -- -- -0.429 20 41.84 53 5.25 16.6
852.44 1.36 8.05 -0.114 -- -- -- -- -0.503 -- -- -- -- --
222.55 0.698 8.13 -- 3.32 -- -- -- -0.469 21 -- -- -- --
215.33 0.683 8.08 -- -- -3.09 -- -- -0.287 -- 44.68 385 0.215 12.6
852.78 1.36 8.04 -- -- -- -- -- -0.491 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.57 radiation 30.0 90 < th dose dependent rect. 5 4
2 165.91 radiation 40.0 90 < th dose independent rect. 5 17
4 166.50 humidity 60.0 90 > th dose dependent rect. 5 12
6 166.87 radiation 20.0 90 < th dose independent rect. 5 4
7 167.18 humidity 80.0 90 > th dose independent rect. 5 6
8 167.26 radiation 10.0 270 < th dose independent rect. 3 5
10 167.42 radiation 20.0 270 < th dose dependent rect. 3 6
15 167.96 humidity 70.0 90 > th dose dependent rect. 5 6
18 168.12 humidity 60.0 90 > th dose dependent rect. 5 10
20 168.22 temperature 10.0 90 > th dose dependent rect. 22 7
22 168.26 humidity 80.0 90 > th dose independent rect. 5 4
24 168.41 radiation 10.0 270 < th dose dependent rect. 3 11
26 168.44 radiation 30.0 90 < th dose dependent rect. 5 6
29 168.95 humidity 50.0 90 > th dose dependent rect. 5 16
33 169.06 radiation 30.0 270 < th dose dependent rect. 15 16
35 169.19 radiation 10.0 270 < th dose independent rect. 15 16
39 169.62 humidity 70.0 90 > th dose dependent rect. 5 4
41 169.70 radiation 40.0 90 < th dose dependent rect. 5 18
52 170.14 radiation 1.0 270 > th dose independent rect. 7 10
55 170.24 precipitation 0.1 90 < th dose independent rect. 7 22
56 170.24 precipitation 0.1 90 < th dose dependent rect. 7 22
66 170.50 wind 5.0 90 < th dose independent rect. 21 8
73 170.92 precipitation 0.1 270 < th dose independent rect. 7 20
74 170.92 precipitation 0.1 270 < th dose dependent rect. 7 20
81 171.16 wind 1.0 270 > th dose independent rect. 3 4
88 171.38 radiation 20.0 90 < th dose independent rect. 5 6
92 171.46 radiation 20.0 90 < th dose independent rect. 5 17
94 171.51 radiation 40.0 270 < th dose dependent rect. 3 14
107 171.74 precipitation 0.1 90 < th dose independent rect. 21 8
108 171.74 precipitation 0.1 90 < th dose dependent rect. 21 8
122 172.16 wind 7.0 90 < th dose independent rect. 5 2
124 172.16 temperature 10.0 90 > th dose independent rect. 5 2
126 172.16 temperature 30.0 90 < th dose independent rect. 5 2
127 172.16 humidity 50.0 90 > th dose independent rect. 5 2
129 172.16 atmosphere 995.0 90 > th dose independent rect. 5 2
130 172.16 atmosphere 1015.0 90 < th dose independent rect. 5 2
132 172.16 temperature 10.0 90 > th dose independent rect. 7 22
134 172.18 precipitation 0.1 90 < th dose independent rect. 5 2
135 172.18 precipitation 0.1 90 < th dose dependent rect. 5 2
141 172.27 temperature 10.0 90 > th dose dependent rect. 5 2
143 172.38 radiation 1.0 90 < th dose dependent rect. 21 8
153 172.65 radiation 1.0 90 < th dose independent rect. 21 8
163 172.68 humidity 70.0 270 > th dose independent rect. 3 4
167 172.70 temperature 10.0 90 > th dose independent rect. 21 8
168 172.70 temperature 30.0 90 < th dose independent rect. 21 8
169 172.70 humidity 50.0 90 > th dose independent rect. 21 8
172 172.70 atmosphere 995.0 90 > th dose independent rect. 21 8
176 172.70 temperature 10.0 90 > th dose independent rect. 5 16
177 172.70 atmosphere 1015.0 90 < th dose independent rect. 5 16
180 172.72 radiation 1.0 90 < th dose dependent sin 10 NA
184 172.80 precipitation 0.1 270 < th dose independent rect. 7 10
186 172.80 precipitation 0.1 270 < th dose dependent rect. 7 10
198 173.00 wind 9.0 90 < th dose independent rect. 7 22
217 173.13 wind 9.0 90 < th dose dependent rect. 5 2
221 173.18 wind 9.0 270 < th dose independent rect. 3 4
222 173.18 temperature 10.0 270 > th dose independent rect. 3 4
224 173.18 temperature 30.0 270 < th dose independent rect. 3 4
225 173.18 humidity 50.0 270 > th dose independent rect. 3 4
227 173.18 atmosphere 995.0 270 > th dose independent rect. 3 4
228 173.18 atmosphere 1015.0 270 < th dose independent rect. 3 4
230 173.18 temperature 10.0 270 > th dose independent rect. 7 20
236 173.35 radiation 40.0 4320 < th dose dependent rect. 23 6
243 173.50 temperature 10.0 30 > th dose dependent rect. 8 21
244 173.52 wind 9.0 270 < th dose independent rect. 7 20
256 173.80 temperature 10.0 270 > th dose dependent rect. 3 4
261 173.86 humidity 80.0 90 > th dose independent rect. 5 14
263 173.88 temperature 10.0 270 > th dose independent rect. 7 10
264 173.88 atmosphere 1015.0 270 < th dose independent rect. 7 10
265 173.88 temperature 10.0 270 > th dose independent rect. 17 14
267 173.90 wind 9.0 270 < th dose independent rect. 7 10
268 173.95 wind 1.0 270 > th dose independent rect. 4 2
270 173.99 precipitation 0.1 270 < th dose independent rect. 3 4
271 173.99 wind 9.0 90 < th dose independent rect. 5 16
272 173.99 precipitation 0.1 270 < th dose dependent rect. 3 4
282 174.14 humidity 50.0 270 > th dose dependent rect. 3 4
286 174.22 wind 9.0 90 < th dose dependent rect. 21 8
297 174.32 humidity 80.0 90 > th dose independent rect. 5 10
313 174.40 humidity 80.0 90 > th dose independent rect. 5 12
325 174.53 wind 9.0 270 < th dose independent rect. 17 14
340 174.69 humidity 80.0 90 > th dose independent rect. 5 8
348 174.78 atmosphere 995.0 270 > th dose independent rect. 17 14
358 174.90 wind 1.0 270 > th dose independent rect. 7 20
368 175.06 radiation 20.0 90 < th dose dependent rect. 5 8
370 175.07 radiation 40.0 270 < th dose independent rect. 3 15
398 175.21 wind 9.0 1440 < th dose independent rect. 23 7
400 175.23 humidity 50.0 270 > th dose independent rect. 17 14
410 175.34 radiation 10.0 270 < th dose independent rect. 3 15
418 175.42 atmosphere 995.0 90 > th dose independent rect. 5 16
443 175.65 temperature 10.0 1440 > th dose independent rect. 23 7
446 175.65 temperature 30.0 1440 < th dose independent rect. 23 7
450 175.65 humidity 50.0 1440 > th dose independent rect. 23 7
459 175.65 atmosphere 995.0 1440 > th dose independent rect. 23 7
460 175.65 radiation 20.0 1440 < th dose independent rect. 23 7
469 175.65 temperature 10.0 1440 > th dose independent rect. 6 17
504 175.98 precipitation 0.1 90 < th dose independent rect. 5 16
505 175.98 precipitation 0.1 90 < th dose dependent rect. 5 16
516 176.04 radiation 40.0 90 < th dose dependent rect. 5 12
544 176.21 temperature 10.0 270 > th dose independent rect. 3 17
545 176.21 atmosphere 1015.0 270 < th dose independent rect. 3 17
553 176.30 humidity 50.0 270 > th dose dependent rect. 3 12
565 176.41 atmosphere 995.0 270 > th dose independent rect. 7 20
582 176.46 atmosphere 1015.0 90 < th dose independent rect. 22 7
607 176.71 atmosphere 995.0 90 > th dose dependent rect. 5 3
620 176.77 radiation 1.0 30 < th dose independent sin 10 NA
636 176.89 atmosphere 995.0 90 > th dose independent rect. 7 22
639 176.93 radiation 10.0 270 < th dose independent rect. 3 10
664 177.03 radiation 40.0 90 < th dose dependent rect. 5 10
676 177.10 wind 9.0 270 < th dose independent rect. 3 17
717 177.26 radiation 1.0 90 > th dose independent rect. 4 3
771 177.56 wind 9.0 1440 < th dose independent rect. 6 3
772 177.56 temperature 10.0 1440 > th dose independent rect. 6 3
775 177.56 humidity 50.0 1440 > th dose independent rect. 6 3
777 177.56 atmosphere 995.0 1440 > th dose independent rect. 6 3
778 177.56 atmosphere 1015.0 1440 < th dose independent rect. 6 3
781 177.56 temperature 10.0 1440 > th dose independent rect. 9 21
786 177.58 radiation 20.0 10 < th dose dependent rect. 6 2
787 177.59 atmosphere 1015.0 90 < th dose dependent rect. 5 2
805 177.72 atmosphere 995.0 270 > th dose independent rect. 7 10
839 177.83 humidity 50.0 90 > th dose dependent rect. 21 8
861 177.99 radiation 10.0 270 < th dose dependent sin 3 NA
920 178.43 atmosphere 995.0 270 > th dose dependent rect. 3 4
928 178.51 radiation 1.0 270 > th dose independent sin 1 NA
929 178.53 atmosphere 995.0 270 > th dose independent rect. 3 17
933 178.54 wind 9.0 270 < th dose dependent rect. 3 4
951 178.65 precipitation 0.1 270 < th dose independent rect. 17 14
952 178.65 precipitation 0.1 270 < th dose dependent rect. 17 14
953 178.67 atmosphere 995.0 90 > th dose dependent rect. 5 17
998 178.93 wind 1.0 270 > th dose independent rect. 21 6