Os09g0422600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF566 family protein.
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Os09g0422600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF566 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.26 | 0.343 | 8.59 | 0.613 | 0.705 | 0.211 | 0.0519 | 2.22 | 0.191 | 7.54 | 20.7 | 1610 | -- | -- |
| 55.5 | 0.347 | 8.64 | 0.0282 | 0.762 | 0.433 | 0.146 | -- | 0.189 | 7.37 | 30.12 | 2163 | -- | -- |
| 53.27 | 0.34 | 8.59 | 0.616 | 0.707 | 0.21 | -- | 2.23 | 0.191 | 7.53 | 20.7 | 1627 | -- | -- |
| 55.19 | 0.346 | 8.62 | -0.0292 | 0.728 | 0.408 | -- | -- | 0.145 | 7.38 | 30.52 | 5636 | -- | -- |
| 79.18 | 0.414 | 8.59 | 0.708 | -- | 0.21 | -- | 2.46 | 0.232 | -- | 21.04 | 2981 | -- | -- |
| 61.49 | 0.368 | 8.65 | 0.0744 | 0.708 | -- | 0.0329 | -- | 0.0849 | 7.48 | -- | -- | -- | -- |
| 61.49 | 0.367 | 8.65 | 0.0752 | 0.708 | -- | -- | -- | 0.0848 | 7.48 | -- | -- | -- | -- |
| 80.24 | 0.417 | 8.65 | -0.0326 | -- | 0.383 | -- | -- | 0.15 | -- | 30.37 | 5732 | -- | -- |
| 54.86 | 0.345 | 8.63 | -- | 0.712 | 0.362 | -- | -- | 0.156 | 7.5 | 30.2 | 5570 | -- | -- |
| 88.25 | 0.439 | 8.66 | 0.0861 | -- | -- | -- | -- | 0.096 | -- | -- | -- | -- | -- |
| 61.64 | 0.367 | 8.65 | -- | 0.708 | -- | -- | -- | 0.0764 | 7.47 | -- | -- | -- | -- |
| 80.26 | 0.417 | 8.65 | -- | -- | 0.381 | -- | -- | 0.154 | -- | 30.5 | 5738 | -- | -- |
| 88.44 | 0.439 | 8.67 | -- | -- | -- | -- | -- | 0.0865 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 2 | 51.50 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 8 | 51.59 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 14 | 51.63 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 40 | 51.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 44 | 51.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 45 | 51.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 52 | 51.85 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 55 | 51.88 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 92 | 52.12 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 142 | 52.50 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 172 | 52.58 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 230 | 52.66 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 252 | 52.68 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 289 | 52.72 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 294 | 52.73 | temperature | 25.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 295 | 52.73 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 306 | 52.74 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 320 | 52.75 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 350 | 52.77 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 360 | 52.78 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 381 | 52.80 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 419 | 52.83 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 420 | 52.83 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 441 | 52.84 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 469 | 52.87 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 502 | 52.90 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 506 | 52.90 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 509 | 52.91 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 556 | 52.95 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 558 | 52.95 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 568 | 52.96 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 584 | 52.97 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 619 | 52.99 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 624 | 52.99 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 642 | 53.00 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 650 | 53.01 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 710 | 53.05 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 739 | 53.07 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 781 | 53.10 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 796 | 53.11 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 826 | 53.13 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 6 |
| 878 | 53.17 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 992 | 53.23 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |