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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0286300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF566 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.042) R2 : 0.0106
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.195 (0.0884) R2dN8 : 0.0136 R2N8 : 0.0106
σ : 0.79
deviance : 286.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.72 0.766 3.06 -0.0566 0.199 -0.018 -2.21 2.21 -0.244 17.5 3.153 6 -- --
280.19 0.78 2.98 -0.125 0.153 -0.438 -1.28 -- -0.207 18.8 9.1 12 -- --
274.42 0.772 3.04 -0.0309 0.147 -0.0232 -- 1.55 -0.204 16.8 3 2 -- --
281.86 0.787 3.01 0.00173 0.102 0.253 -- -- -0.209 1.08 1.83 4 -- --
275.34 0.773 3.04 -0.0492 -- 0.0386 -- 1.49 -0.234 -- 3.001 2 -- --
282.85 0.788 3.01 -0.113 0.11 -- -1.07 -- -0.201 19.4 -- -- -- --
285.91 0.792 3.01 -0.088 0.113 -- -- -- -0.203 18.5 -- -- -- --
282.41 0.786 3.01 -0.00705 -- 0.22 -- -- -0.207 -- 1.9 4 -- --
281.48 0.781 3.01 -- 0.0872 0.302 -- -- -0.23 1.64 1.9 17 -- --
286.58 0.791 3.01 -0.0909 -- -- -- -- -0.205 -- -- -- -- --
286.12 0.791 3.01 -- 0.114 -- -- -- -0.193 18.4 -- -- -- --
282.02 0.782 3.01 -- -- 0.275 -- -- -0.23 -- 1.896 17 -- --
286.8 0.79 3 -- -- -- -- -- -0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 251.17 humidity 80 30 < th dose dependent rect. 3 3
3 251.23 humidity 80 10 < th dose independent rect. 3 3
10 251.41 humidity 80 270 < th dose independent rect. 2 1
11 251.42 humidity 80 270 < th dose dependent rect. 2 1
24 253.31 atmosphere 1010 10 > th dose dependent rect. 10 1
88 255.36 temperature 20 270 < th dose dependent rect. 6 1
131 259.09 humidity 80 270 < th dose independent rect. 24 8
142 260.22 humidity 80 1440 > th dose independent rect. 3 1
155 260.49 atmosphere 1010 270 > th dose independent rect. 5 1
180 261.50 humidity 80 1440 < th dose dependent rect. 21 7
193 261.96 temperature 20 720 < th dose independent rect. 12 8
195 261.99 temperature 20 720 > th dose independent rect. 10 13
209 262.37 temperature 20 720 > th dose independent rect. 11 10
227 262.66 temperature 20 720 < th dose independent sin 19 NA
238 262.91 atmosphere 1015 1440 < th dose independent rect. 10 3
241 262.94 atmosphere 1015 1440 < th dose independent rect. 7 6
247 263.01 atmosphere 1015 1440 < th dose independent rect. 5 8
248 263.02 atmosphere 1015 1440 > th dose dependent rect. 10 3
261 263.08 atmosphere 1015 1440 > th dose independent rect. 10 3
282 263.17 humidity 80 270 < th dose independent rect. 21 11
342 263.33 atmosphere 1015 1440 > th dose dependent sin 1 NA
350 263.40 temperature 20 720 > th dose independent sin 20 NA
356 263.43 atmosphere 1015 1440 > th dose dependent rect. 24 13
369 263.46 humidity 80 1440 < th dose independent rect. 21 7
380 263.53 temperature 20 720 < th dose independent rect. 9 11
390 263.61 atmosphere 1015 1440 < th dose independent rect. 24 13
397 263.67 temperature 20 720 > th dose independent rect. 10 16
405 263.72 temperature 20 720 < th dose independent rect. 12 13
412 263.77 temperature 20 720 < th dose independent rect. 12 15
413 263.77 temperature 20 270 < th dose independent rect. 24 20
417 263.80 atmosphere 1015 1440 > th dose independent rect. 24 13
438 263.92 temperature 20 720 < th dose independent rect. 9 18
469 264.06 temperature 20 270 < th dose independent rect. 24 7
513 264.22 humidity 90 10 < th dose dependent rect. 3 1
539 264.27 wind 3 10 > th dose dependent rect. 3 1
568 264.39 temperature 20 270 > th dose independent rect. 18 21
574 264.41 atmosphere 1015 1440 > th dose independent sin 2 NA
581 264.43 temperature 20 720 > th dose independent rect. 13 9
653 264.61 temperature 20 1440 > th dose independent rect. 18 1
687 264.71 temperature 20 270 > th dose independent rect. 19 18
738 265.03 wind 3 10 > th dose independent rect. 5 18
767 265.15 atmosphere 1015 1440 < th dose independent rect. 5 12
774 265.18 temperature 20 270 < th dose independent rect. 1 2
789 265.22 temperature 20 270 < th dose independent rect. 24 13
807 265.27 atmosphere 1015 1440 < th dose independent sin 2 NA
845 265.44 humidity 80 30 < th dose independent rect. 21 10
887 265.57 atmosphere 1015 1440 < th dose independent rect. 24 17
929 265.73 temperature 20 720 < th dose dependent rect. 22 1
950 265.80 humidity 80 270 < th dose independent sin 10 NA
953 265.80 temperature 20 270 < th dose dependent rect. 24 7
986 265.92 wind 3 10 > th dose independent rect. 5 11
996 265.96 temperature 20 270 < th dose independent rect. 24 4