BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0272500 Os09g0272500|AK071858
         (237 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0272500  Conserved hypothetical protein                      478   e-135
Os08g0533700  Conserved hypothetical protein                      311   3e-85
Os02g0306100  Conserved hypothetical protein                      179   1e-45
Os08g0535000  Conserved hypothetical protein                      131   4e-31

>Os09g0272500 Conserved hypothetical protein
          Length = 237

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/237 (100%), Positives = 237/237 (100%)

Query: 1   MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60
           MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY
Sbjct: 1   MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60

Query: 61  SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQIRSPIALSPGLRRRLTALQEIEQP 120
           SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQIRSPIALSPGLRRRLTALQEIEQP
Sbjct: 61  SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQIRSPIALSPGLRRRLTALQEIEQP 120

Query: 121 TNAKERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQATEKI 180
           TNAKERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQATEKI
Sbjct: 121 TNAKERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQATEKI 180

Query: 181 LDSTERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRVT 237
           LDSTERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRVT
Sbjct: 181 LDSTERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRVT 237



>Os08g0533700 Conserved hypothetical protein
          Length = 238

 Score =  311 bits (796), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/238 (66%), Positives = 192/238 (80%), Gaps = 1/238 (0%)

Query: 1   MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60
           M +SK EVNLLRLL++APRQQNQAKL+HYVTT+RELLE+L AE T EGISS++K +++EY
Sbjct: 1   MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60

Query: 61  SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQIRSPIALSPGLRRRLTALQEIEQP 120
           SE+IE LAARLA   P  E  V+  R+ ES  EGE+  SPI+LS GLRRR  A  ++   
Sbjct: 61  SEKIEALAARLAVPEPENEVPVDENREVESSYEGEKPGSPISLSSGLRRRPIAHTDVGPS 120

Query: 121 TNA-KERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQATEK 179
           ++A K+R++  P++LD  AQA+IEK+R LQEDLTDE+VELARQLK+SSL M+QSVQ TEK
Sbjct: 121 SHARKDRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEK 180

Query: 180 ILDSTERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRVT 237
           ILDSTERAV +SLA T RA  +A EV SL SKTTCFQW L+F+MTCMFIMVVLLIRVT
Sbjct: 181 ILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMVVLLIRVT 238



>Os02g0306100 Conserved hypothetical protein
          Length = 136

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 99/114 (86%)

Query: 124 KERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQATEKILDS 183
           K+R++  P++LDE AQA+IEK+R LQEDLTDE+VELARQLK+SSL M+QSVQ TEKILDS
Sbjct: 23  KDRDIGAPIKLDEEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEKILDS 82

Query: 184 TERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRVT 237
           TERAV +SLA T RA  +A EV SL SKTTCFQW L+F+MTCMFIMVVLLIRVT
Sbjct: 83  TERAVEHSLASTGRATTRAAEVYSLASKTTCFQWLLIFMMTCMFIMVVLLIRVT 136



>Os08g0535000 Conserved hypothetical protein
          Length = 112

 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 87/110 (79%)

Query: 1   MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60
           M +SK EVNL+RLL++APRQQNQ KL+HYVTT+RELLE+L +E T EGISS++K + +EY
Sbjct: 1   MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60

Query: 61  SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQIRSPIALSPGLRRR 110
           SE+IE LAARLA+  P  E  V+  R+ ES  EG++  SPI+LS GLRRR
Sbjct: 61  SEKIEALAARLAAPEPENEMPVDENREVESSYEGDKPGSPISLSSGLRRR 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,906,941
Number of extensions: 199680
Number of successful extensions: 775
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 4
Length of query: 237
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 139
Effective length of database: 11,918,829
Effective search space: 1656717231
Effective search space used: 1656717231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)