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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0533700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.5 (0.0408) R2 : 0.284
β1 : -1.17 (0.15) R2dD : 0.101 R2D : 0.0144
β2 : 0.757 (0.105) R2dC : 0.0913 R2C : 0.012
β3 : 1.03 (0.155) R2dE : 0.0797 R2E : 0.0124
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.666 (0.0877) R2dN8 : 0.125 R2N8 : 0.0904
σ : 0.758
deviance : 264.75
__
_____
C
peak time of C : 9.36
E
wheather : temperature
threshold : 32.9
memory length : 736
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
258.17 0.755 8.35 0.0356 0.725 -0.151 -0.0112 10.1 -0.589 9.79 30.1 811 -- --
264.92 0.758 8.5 -1.15 0.735 0.981 -0.632 -- -0.655 9.26 32.98 739 -- --
258.13 0.748 8.35 0.0452 0.724 -0.153 -- 10 -0.586 9.82 30.06 820 -- --
264.75 0.758 8.5 -1.17 0.757 1.03 -- -- -0.666 9.36 32.9 736 -- --
286.74 0.789 8.36 0.00269 -- -0.226 -- 8.37 -0.578 -- 30.1 897 -- --
287.99 0.796 8.53 -1.01 0.551 -- -0.56 -- -0.76 10 -- -- -- --
289.15 0.796 8.53 -1.03 0.552 -- -- -- -0.76 10.3 -- -- -- --
282.36 0.783 8.54 -1.22 -- 0.771 -- -- -0.563 -- 30.59 5885 -- --
300.24 0.807 8.49 -- 0.741 0.95 -- -- -0.573 9.21 33 698 -- --
307.72 0.82 8.54 -1.04 -- -- -- -- -0.762 -- -- -- -- --
317.06 0.833 8.5 -- 0.558 -- -- -- -0.645 10.4 -- -- -- --
319.88 0.833 8.5 -- -- 0.559 -- -- -0.577 -- 30.71 5887 -- --
336.11 0.856 8.52 -- -- -- -- -- -0.646 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.70 temperature 25 30 > th dose dependent rect. 18 14
3 248.03 humidity 80 14400 < th dose dependent rect. 16 1
4 248.13 humidity 60 14400 < th dose independent rect. 13 1
5 248.14 humidity 80 14400 < th dose dependent rect. 16 3
7 248.29 humidity 80 14400 < th dose dependent rect. 15 11
16 248.42 humidity 70 14400 > th dose independent rect. 15 4
22 248.49 humidity 70 14400 > th dose independent rect. 16 2
38 248.62 humidity 80 14400 < th dose dependent sin 15 NA
45 248.68 humidity 60 14400 > th dose independent rect. 13 1
57 248.77 humidity 70 14400 < th dose independent rect. 15 3
84 249.05 humidity 70 14400 > th dose independent rect. 14 20
103 249.20 humidity 70 14400 > th dose independent rect. 12 22
109 249.22 humidity 70 14400 > th dose independent rect. 15 9
150 249.49 humidity 70 14400 > th dose independent rect. 8 11
198 249.64 humidity 70 14400 > th dose independent sin 17 NA
199 249.64 humidity 50 14400 > th dose dependent rect. 16 3
242 249.73 humidity 70 14400 < th dose independent rect. 14 19
244 249.74 humidity 70 14400 > th dose independent rect. 12 7
246 249.74 humidity 50 14400 > th dose dependent rect. 16 5
256 249.77 humidity 70 14400 < th dose independent rect. 12 22
260 249.78 humidity 70 14400 < th dose independent rect. 12 7
266 249.79 humidity 50 14400 > th dose dependent rect. 12 10
271 249.80 humidity 70 14400 < th dose independent rect. 15 7
307 249.84 humidity 70 14400 > th dose independent rect. 12 10
308 249.84 humidity 70 14400 > th dose independent rect. 12 12
345 249.90 humidity 70 14400 > th dose independent rect. 8 16
439 250.01 humidity 70 14400 > th dose independent no NA NA
488 250.03 humidity 70 14400 < th dose independent rect. 8 10
495 250.03 humidity 50 14400 > th dose dependent sin 19 NA
512 250.06 humidity 70 14400 < th dose independent rect. 12 10
558 250.09 humidity 70 14400 < th dose independent sin 18 NA
591 250.13 humidity 90 14400 < th dose dependent rect. 24 22
689 250.23 humidity 90 14400 < th dose dependent rect. 4 22
724 250.26 humidity 90 14400 < th dose dependent no NA NA
742 250.29 humidity 90 14400 < th dose dependent rect. 20 23
749 250.30 humidity 90 14400 < th dose dependent rect. 15 23
758 250.32 humidity 50 14400 > th dose dependent rect. 6 16
778 250.35 humidity 50 14400 > th dose dependent rect. 4 18