BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0533700 Os08g0533700|AK073691
(238 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55600.1 | chr3:20620682-20622341 FORWARD LENGTH=241 263 4e-71
AT1G54110.1 | chr1:20199909-20201623 FORWARD LENGTH=237 240 4e-64
>AT3G55600.1 | chr3:20620682-20622341 FORWARD LENGTH=241
Length = 240
Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/242 (59%), Positives = 166/242 (68%), Gaps = 7/242 (2%)
Query: 1 MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60
M +SK E+NL RLL AAP QQNQ+KL+HYV T RE LEQL E TPEG+ V+KAK++EY
Sbjct: 2 MGISKTEINLRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTKAKVNEY 61
Query: 61 SEKIEALAARLAXXXXXXXXXXXXXXXXXSSYEGEK----PGSPISLSSGLRRRPIAHTD 116
EKIEA+A+++A +S K P SP S LRRR + +
Sbjct: 62 YEKIEAVASKIASQEPETEVSDEPFAKDSTSGSSPKIEDEPRSPTS--PQLRRRIVPASS 119
Query: 117 VGPSSHARKDRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQ 176
S A D D PIKLD AQAHI+KHRKLQEDLTDEMV LARQLKE S + QSVQ
Sbjct: 120 KEQSFDA-ADADSSKPIKLDTAAQAHIDKHRKLQEDLTDEMVVLARQLKERSQAISQSVQ 178
Query: 177 ETEKILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMVVLLIR 236
TEKILDSTE A+E SLASTG A TRA ++YS +SKT+CFQWLLIF M C+FIMVVLLIR
Sbjct: 179 NTEKILDSTEEAIEQSLASTGHATTRATKIYSQSSKTSCFQWLLIFAMICVFIMVVLLIR 238
Query: 237 VT 238
VT
Sbjct: 239 VT 240
>AT1G54110.1 | chr1:20199909-20201623 FORWARD LENGTH=237
Length = 236
Score = 240 bits (613), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/247 (53%), Positives = 157/247 (63%), Gaps = 20/247 (8%)
Query: 1 MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60
M + K E+N +RLL AAP QQNQ+KL+HYV T RE LEQL E T EG+ V+ AK++EY
Sbjct: 1 MGIGKTEINFMRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTLEGLPRVTNAKVNEY 60
Query: 61 SEKIEALAARLAXXXXXXXXXXXXXXXXXSSYEGEK-------PGSPISLSSGLRRRPIA 113
EKIEA+ +R+ ++ K P SP LRRR
Sbjct: 61 YEKIEAVVSRIVAQVPHTEVSDEAFAKDSTNDSSPKVEDDTRTPNSP-----QLRRR--- 112
Query: 114 HTDVGPSSHARK--DRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTM 171
+ P+S + D D PIKLD AQA + K RKLQEDLTDEMV LARQLKE S +
Sbjct: 113 ---IVPASSKEQSYDADPSKPIKLDTAAQAQVNKQRKLQEDLTDEMVVLARQLKERSQMI 169
Query: 172 HQSVQETEKILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMV 231
QSVQ TEKILDSTE A+E SLASTG A RA ++YS +SKT+CFQWLLI MTC+FIMV
Sbjct: 170 SQSVQNTEKILDSTEEAIEQSLASTGHATVRATKIYSESSKTSCFQWLLILAMTCVFIMV 229
Query: 232 VLLIRVT 238
V+LIRVT
Sbjct: 230 VMLIRVT 236
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,806,288
Number of extensions: 126517
Number of successful extensions: 680
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)