BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0533700 Os08g0533700|AK073691
         (238 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0533700  Conserved hypothetical protein                      441   e-124
Os09g0272500  Conserved hypothetical protein                      303   9e-83
Os02g0306100  Conserved hypothetical protein                      250   7e-67
Os08g0535000  Conserved hypothetical protein                      167   7e-42

>Os08g0533700 Conserved hypothetical protein
          Length = 238

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/238 (92%), Positives = 221/238 (92%)

Query: 1   MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60
           MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY
Sbjct: 1   MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60

Query: 61  SEKIEALAARLAXXXXXXXXXXXXXXXXXSSYEGEKPGSPISLSSGLRRRPIAHTDVGPS 120
           SEKIEALAARLA                 SSYEGEKPGSPISLSSGLRRRPIAHTDVGPS
Sbjct: 61  SEKIEALAARLAVPEPENEVPVDENREVESSYEGEKPGSPISLSSGLRRRPIAHTDVGPS 120

Query: 121 SHARKDRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEK 180
           SHARKDRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEK
Sbjct: 121 SHARKDRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEK 180

Query: 181 ILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMVVLLIRVT 238
           ILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMVVLLIRVT
Sbjct: 181 ILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMVVLLIRVT 238



>Os09g0272500 Conserved hypothetical protein
          Length = 237

 Score =  303 bits (775), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 153/238 (64%), Positives = 185/238 (77%), Gaps = 1/238 (0%)

Query: 1   MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60
           M +SK EVNLLRLL++APRQQNQAKL+HYVTT+RELLE+L AE T EGISS++K +++EY
Sbjct: 1   MGISKTEVNLLRLLDSAPRQQNQAKLIHYVTTSRELLEKLAAENTSEGISSIAKGRLNEY 60

Query: 61  SEKIEALAARLAXXXXXXXXXXXXXXXXXSSYEGEKPGSPISLSSGLRRRPIAHTDVGPS 120
           SE+IE LAARLA                 S  EGE+  SPI+LS GLRRR  A  ++   
Sbjct: 61  SERIEELAARLASLVPGYENAVEAIRKEESYLEGEQIRSPIALSPGLRRRLTALQEIEQP 120

Query: 121 SHARKDRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMHQSVQETEK 180
           ++A K+R++  P++LD  AQA+IEK+R LQEDLTDE+VELARQLK+SSL M+QSVQ TEK
Sbjct: 121 TNA-KERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVELARQLKDSSLMMNQSVQATEK 179

Query: 181 ILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMVVLLIRVT 238
           ILDSTERAV +SLA T RA  +A EV SL SKTTCFQW L+F+MTCMFIMVVLLIRVT
Sbjct: 180 ILDSTERAVAYSLAGTDRANAQAVEVSSLTSKTTCFQWFLLFVMTCMFIMVVLLIRVT 237



>Os02g0306100 Conserved hypothetical protein
          Length = 136

 Score =  250 bits (638), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 121/126 (96%), Positives = 121/126 (96%)

Query: 113 AHTDVGPSSHARKDRDIGAPIKLDAEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMH 172
           AH  VGPSSH RKDRDIGAPIKLD EAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMH
Sbjct: 11  AHNVVGPSSHERKDRDIGAPIKLDEEAQAHIEKHRKLQEDLTDEMVELARQLKESSLTMH 70

Query: 173 QSVQETEKILDSTERAVEHSLASTGRAATRAAEVYSLASKTTCFQWLLIFMMTCMFIMVV 232
           QSVQETEKILDSTERAVEHSLASTGRA TRAAEVYSLASKTTCFQWLLIFMMTCMFIMVV
Sbjct: 71  QSVQETEKILDSTERAVEHSLASTGRATTRAAEVYSLASKTTCFQWLLIFMMTCMFIMVV 130

Query: 233 LLIRVT 238
           LLIRVT
Sbjct: 131 LLIRVT 136



>Os08g0535000 Conserved hypothetical protein
          Length = 112

 Score =  167 bits (423), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 91/112 (81%)

Query: 1   MALSKVEVNLLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSKAKISEY 60
           M LSKVEVNL+RLLEAAPRQQNQ KLVHYVTTARELLEQLG+ETT EGISSVSKAK SEY
Sbjct: 1   MVLSKVEVNLIRLLEAAPRQQNQTKLVHYVTTARELLEQLGSETTLEGISSVSKAKTSEY 60

Query: 61  SEKIEALAARLAXXXXXXXXXXXXXXXXXSSYEGEKPGSPISLSSGLRRRPI 112
           SEKIEALAARLA                 SSYEG+KPGSPISLSSGLRRRP+
Sbjct: 61  SEKIEALAARLAAPEPENEMPVDENREVESSYEGDKPGSPISLSSGLRRRPM 112



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,989,642
Number of extensions: 202229
Number of successful extensions: 930
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 4
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)