BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0111800 Os09g0111800|AK069338
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0111800 RNA-binding region RNP-1 (RNA recognition moti... 409 e-115
Os04g0689700 Nucleotide-binding, alpha-beta plait domain co... 364 e-101
Os02g0669700 RNA-binding region RNP-1 (RNA recognition moti... 281 4e-76
Os07g0256200 RNA-binding region RNP-1 (RNA recognition moti... 162 2e-40
>Os09g0111800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 214
Score = 409 bits (1051), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/214 (92%), Positives = 198/214 (92%)
Query: 1 MSQVGSAPAPMVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDV 60
MSQVGSAPAPMVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDV
Sbjct: 1 MSQVGSAPAPMVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDV 60
Query: 61 EFIVNYTIPYDIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRER 120
EFIVNYTIPYDIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRER
Sbjct: 61 EFIVNYTIPYDIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRER 120
Query: 121 PPCPDIKKEFRWVKQEDGTEYEGMKKLRILAKRQEAENMALIKNXXXXXXXXXXXXXXXX 180
PPCPDIKKEFRWVKQEDGTEYEGMKKLRILAKRQEAENMALIKN
Sbjct: 121 PPCPDIKKEFRWVKQEDGTEYEGMKKLRILAKRQEAENMALIKNQLEEEKELAKQQQELL 180
Query: 181 DGNYKKYDMLENVVQNGNMKSLAQHYGVSLADEF 214
DGNYKKYDMLENVVQNGNMKSLAQHYGVSLADEF
Sbjct: 181 DGNYKKYDMLENVVQNGNMKSLAQHYGVSLADEF 214
>Os04g0689700 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 204
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/204 (86%), Positives = 181/204 (88%)
Query: 11 MVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPY 70
MVTS EDAKKAYADFEKKVKRTIYIDHLSPQVTSSV+KAALAQC NVVDVEFIVNYT+PY
Sbjct: 1 MVTSDEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPY 60
Query: 71 DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEF 130
DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRA CAKP+MFRERPP P I+KEF
Sbjct: 61 DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEF 120
Query: 131 RWVKQEDGTEYEGMKKLRILAKRQEAENMALIKNXXXXXXXXXXXXXXXXDGNYKKYDML 190
RWVKQEDGTEY+GMKKLRILAKRQE ENMALIKN DGNY KYDML
Sbjct: 121 RWVKQEDGTEYQGMKKLRILAKRQEVENMALIKNQLEEEKELAKQQQELLDGNYNKYDML 180
Query: 191 ENVVQNGNMKSLAQHYGVSLADEF 214
ENVVQNGNMKSLAQHYGVSLADEF
Sbjct: 181 ENVVQNGNMKSLAQHYGVSLADEF 204
>Os02g0669700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 201
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 139/198 (70%), Positives = 163/198 (82%), Gaps = 1/198 (0%)
Query: 14 SHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIP 73
S EDAKK YADFE++VKRTIYIDHLSPQVTSSV++AA++QCA VV+V+FIVNYTIPYDIP
Sbjct: 3 SDEDAKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYDIP 62
Query: 74 SAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWV 133
SAALVELDDEIQAKAA+DLMN+FPFIIGG PRPVRA AK +MF +RPP P IKKEF+WV
Sbjct: 63 SAALVELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQWV 122
Query: 134 KQEDGTEYEGMKKLRILAKRQEAENMALIKNXXXXXXXXXXXXXXXXDGNYKKYDMLENV 193
KQEDG EYEGM KLR+LA+RQE ENMALIKN DG YKKY +L++
Sbjct: 123 KQEDGIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILDSD 182
Query: 194 VQNGNMKSLAQHYGVSLA 211
V N ++K+L++ YGV+LA
Sbjct: 183 VMN-DIKNLSRRYGVNLA 199
>Os07g0256200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 858
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Query: 18 AKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIPSAAL 77
A K Y +FE+KVKRT+Y+D+ S Q T SV++ AL Q V ++ F+VNYTIP+ IP +AL
Sbjct: 657 AIKQYQEFEEKVKRTVYLDYFSHQATESVIRTALNQFGTVREINFVVNYTIPFSIPQSAL 716
Query: 78 VELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWVKQED 137
V ++ E A A ++++N+FPF++ GMPRPVRAT A +MF +RP P K EFRWV D
Sbjct: 717 VIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATRATAEMFNDRPRRPGNKLEFRWVGPSD 776
Query: 138 GTEYEGMKKLRILAKRQEAENMALIKNXXXXXXXXXXXXXXXXDGNYKKYDMLENVVQNG 197
+Y +KKL+++++R E +N+AL+K+ + N +K +++++++ G
Sbjct: 777 A-DYHIVKKLKLMSRRHELDNLALVKHELEEEHFLAKHQEEILNCNQRKLEVMDSIMLTG 835
Query: 198 NMKSLAQHYGVSLADEF 214
L Y V + + F
Sbjct: 836 KFTHLQHIYSVKVDEVF 852
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,709,740
Number of extensions: 258037
Number of successful extensions: 581
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 4
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)