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Os09g0111800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0137) R2 : 0.686
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.11 (0.0359) R2dC : 0.665 R2C : 0.646
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.194 (0.0289) R2dN8 : 0.04 R2N8 : 0.0216
σ : 0.259
deviance : 30.74
__
_____
C
peak time of C : 5.22
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.21 0.201 12.4 -0.309 1.13 -0.0348 -0.16 1.07 -0.164 5.19 20.28 3149 -- --
19.12 0.204 12.4 -0.301 1.13 -0.374 -0.101 -- -0.183 5.17 15.47 24431 -- --
18.28 0.199 12.4 -0.301 1.13 -0.0367 -- 1.08 -0.163 5.18 20.52 3179 -- --
19.15 0.204 12.4 -0.326 1.12 -0.367 -- -- -0.178 5.17 15.5 24549 -- --
83.03 0.427 12.4 -0.46 -- -0.269 -- 0.233 -0.172 -- 20.52 3179 -- --
20.83 0.214 12.5 -0.612 1.12 -- -0.136 -- -0.263 5.19 -- -- -- --
20.88 0.214 12.5 -0.612 1.12 -- -- -- -0.262 5.2 -- -- -- --
83.32 0.427 12.5 -0.502 -- -0.281 -- -- -0.181 -- 20.52 3179 -- --
20.12 0.209 12.4 -- 1.13 -0.556 -- -- -0.0947 5.19 15.88 47520 -- --
86.96 0.436 12.5 -0.572 -- -- -- -- -0.234 -- -- -- -- --
30.74 0.259 12.4 -- 1.11 -- -- -- -0.194 5.22 -- -- -- --
86.33 0.433 12.4 -- -- -0.524 -- -- -0.0809 -- 15.24 47520 -- --
95.6 0.456 12.5 -- -- -- -- -- -0.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.01 temperature 20.0 10 > th dose independent rect. 6 21
2 16.02 temperature 10.0 270 > th dose dependent rect. 16 9
4 16.15 temperature 20.0 90 > th dose independent rect. 6 20
10 16.37 temperature 20.0 270 > th dose independent rect. 15 10
20 16.58 temperature 30.0 90 < th dose dependent rect. 15 15
26 16.64 temperature 30.0 10 < th dose dependent rect. 14 16
33 16.69 temperature 10.0 90 > th dose dependent rect. 6 20
35 16.72 atmosphere 1000.0 90 > th dose independent rect. 5 22
37 16.76 temperature 10.0 90 > th dose dependent rect. 5 22
39 16.77 temperature 30.0 10 < th dose dependent rect. 12 18
45 16.83 temperature 10.0 10 > th dose dependent rect. 6 21
46 16.84 radiation 40.0 270 < th dose independent rect. 14 11
47 16.84 precipitation 0.1 270 < th dose independent rect. 1 14
48 16.84 precipitation 0.1 270 < th dose dependent rect. 1 14
49 16.85 temperature 30.0 10 < th dose dependent rect. 17 13
58 16.87 radiation 40.0 270 < th dose dependent rect. 5 5
66 16.88 radiation 40.0 90 < th dose dependent rect. 6 21
76 16.96 radiation 1.0 270 < th dose dependent rect. 16 13
78 16.97 radiation 40.0 270 < th dose independent rect. 5 5
81 16.98 humidity 50.0 270 > th dose dependent rect. 5 5
85 16.99 temperature 10.0 270 > th dose independent rect. 15 10
86 16.99 temperature 10.0 270 > th dose independent rect. 1 14
87 16.99 atmosphere 1015.0 270 < th dose independent rect. 1 14
88 16.99 radiation 40.0 270 < th dose dependent rect. 5 8
90 17.00 wind 9.0 270 < th dose independent rect. 1 14
100 17.02 atmosphere 995.0 270 > th dose independent rect. 1 13
104 17.02 radiation 20.0 10 < th dose dependent rect. 7 20
113 17.06 wind 9.0 270 < th dose independent rect. 15 10
114 17.06 radiation 1.0 270 < th dose dependent sin 10 NA
118 17.07 precipitation 0.1 270 < th dose independent rect. 10 19
120 17.07 precipitation 0.1 270 < th dose dependent rect. 10 19
126 17.10 wind 9.0 270 < th dose independent rect. 10 19
134 17.12 temperature 10.0 270 > th dose independent rect. 5 5
135 17.12 humidity 50.0 270 > th dose independent rect. 5 5
136 17.12 atmosphere 995.0 270 > th dose independent rect. 5 5
137 17.12 atmosphere 1015.0 270 < th dose independent rect. 5 5
138 17.12 temperature 10.0 270 > th dose independent rect. 10 19
139 17.13 wind 9.0 270 < th dose independent rect. 5 5
140 17.13 temperature 30.0 270 < th dose independent rect. 5 5
142 17.13 temperature 20.0 10 > th dose independent rect. 18 9
146 17.14 precipitation 0.1 270 < th dose independent rect. 5 5
147 17.14 temperature 20.0 10 > th dose independent rect. 16 11
150 17.14 precipitation 0.1 270 < th dose dependent rect. 5 5
152 17.15 wind 3.0 90 < th dose independent rect. 3 2
157 17.16 atmosphere 1000.0 90 > th dose dependent rect. 3 2
159 17.17 precipitation 0.1 270 < th dose independent rect. 15 10
161 17.17 precipitation 0.1 270 < th dose dependent rect. 15 10
180 17.19 temperature 10.0 90 > th dose dependent rect. 3 2
194 17.21 temperature 20.0 90 > th dose dependent rect. 4 1
210 17.24 wind 7.0 90 < th dose dependent rect. 3 2
213 17.24 radiation 40.0 270 < th dose dependent rect. 6 2
219 17.25 radiation 1.0 270 < th dose independent sin 10 NA
220 17.25 precipitation 0.1 90 < th dose independent rect. 3 2
223 17.25 temperature 25.0 90 < th dose independent rect. 15 15
225 17.25 precipitation 0.1 90 < th dose dependent rect. 3 2
235 17.27 humidity 80.0 90 > th dose independent rect. 3 2
237 17.27 atmosphere 995.0 270 > th dose independent rect. 15 10
239 17.27 radiation 1.0 90 < th dose dependent rect. 4 1
249 17.30 atmosphere 1015.0 90 < th dose independent rect. 5 22
255 17.32 atmosphere 1005.0 90 > th dose independent rect. 3 2
256 17.32 radiation 1.0 270 < th dose independent rect. 16 13
261 17.33 radiation 1.0 90 < th dose independent rect. 4 1
277 17.34 humidity 50.0 270 > th dose dependent rect. 6 2
279 17.34 humidity 50.0 270 > th dose dependent rect. 5 9
288 17.35 temperature 10.0 90 > th dose independent rect. 3 2
290 17.35 temperature 30.0 90 < th dose independent rect. 3 2
291 17.35 humidity 50.0 90 > th dose independent rect. 3 2
294 17.35 atmosphere 995.0 90 > th dose independent rect. 3 2
295 17.35 atmosphere 1010.0 90 < th dose independent rect. 3 2
303 17.35 atmosphere 1000.0 90 > th dose independent rect. 17 10
306 17.35 temperature 10.0 90 > th dose independent rect. 5 22
307 17.35 precipitation 0.1 270 < th dose independent rect. 8 22
313 17.35 precipitation 0.1 270 < th dose dependent rect. 8 22
332 17.36 precipitation 0.1 10 < th dose independent rect. 12 18
333 17.36 humidity 50.0 270 > th dose independent rect. 10 19
345 17.36 precipitation 0.1 10 < th dose dependent rect. 12 18
352 17.37 wind 1.0 270 > th dose independent rect. 10 19
361 17.39 atmosphere 1000.0 270 > th dose independent rect. 6 2
378 17.41 atmosphere 1000.0 270 > th dose dependent rect. 23 6
382 17.42 radiation 40.0 270 < th dose independent rect. 6 2
384 17.42 radiation 20.0 270 < th dose independent rect. 5 8
385 17.42 wind 1.0 270 > th dose independent rect. 15 10
389 17.43 wind 9.0 270 < th dose independent rect. 6 2
390 17.43 temperature 10.0 270 > th dose independent rect. 6 2
392 17.43 temperature 30.0 270 < th dose independent rect. 6 2
393 17.43 humidity 50.0 270 > th dose independent rect. 6 2
396 17.43 atmosphere 1015.0 270 < th dose independent rect. 6 2
399 17.43 temperature 10.0 270 > th dose independent rect. 8 22
408 17.44 precipitation 0.1 270 < th dose independent rect. 6 2
412 17.44 radiation 40.0 270 < th dose independent rect. 5 8
417 17.44 precipitation 0.1 270 < th dose dependent rect. 6 2
425 17.45 temperature 10.0 10 > th dose independent rect. 6 6
427 17.45 atmosphere 995.0 10 > th dose independent rect. 6 6
428 17.45 atmosphere 1015.0 10 < th dose independent rect. 6 6
430 17.45 temperature 10.0 10 > th dose independent rect. 12 18
438 17.46 temperature 20.0 720 > th dose independent rect. 13 4
439 17.46 humidity 50.0 10 > th dose independent rect. 6 6
440 17.46 precipitation 0.1 10 < th dose independent rect. 6 6
443 17.46 wind 9.0 270 < th dose independent rect. 8 22
448 17.46 precipitation 0.1 10 < th dose dependent rect. 6 6
456 17.47 atmosphere 995.0 270 > th dose independent rect. 10 19
470 17.48 precipitation 0.1 90 < th dose independent rect. 5 22
471 17.48 humidity 50.0 90 > th dose dependent rect. 4 1
477 17.48 precipitation 0.1 90 < th dose dependent rect. 5 22
482 17.49 temperature 15.0 10 > th dose dependent rect. 3 3
483 17.49 wind 9.0 270 < th dose dependent rect. 5 4
492 17.50 wind 9.0 10 < th dose independent rect. 12 18
503 17.51 wind 9.0 10 < th dose independent rect. 6 6
528 17.52 wind 1.0 10 > th dose independent rect. 6 6
532 17.52 atmosphere 1000.0 270 > th dose independent rect. 5 18
535 17.52 wind 9.0 90 < th dose independent rect. 5 22
545 17.53 atmosphere 1000.0 720 > th dose independent rect. 14 3
579 17.55 radiation 20.0 90 < th dose independent rect. 6 21
584 17.56 radiation 20.0 1440 < th dose independent rect. 11 1
586 17.56 radiation 40.0 90 < th dose independent rect. 6 21
624 17.59 radiation 10.0 10 < th dose independent rect. 4 2
625 17.59 wind 3.0 10 < th dose independent rect. 3 3
627 17.59 wind 1.0 270 > th dose independent rect. 5 5
648 17.60 wind 9.0 270 < th dose dependent rect. 6 2
662 17.61 atmosphere 1015.0 270 < th dose independent rect. 15 10
678 17.62 precipitation 0.1 10 < th dose independent rect. 3 3
679 17.62 radiation 1.0 10 > th dose independent rect. 6 6
684 17.62 humidity 50.0 10 > th dose independent rect. 12 18
686 17.62 precipitation 0.1 10 < th dose dependent rect. 3 3
689 17.62 temperature 10.0 10 > th dose dependent rect. 16 11
691 17.63 radiation 1.0 270 > th dose independent sin 10 NA
716 17.64 atmosphere 1015.0 90 < th dose dependent rect. 4 1
718 17.64 atmosphere 1000.0 270 > th dose dependent rect. 1 3
734 17.65 atmosphere 1015.0 270 < th dose independent rect. 5 18
736 17.65 atmosphere 1015.0 10 < th dose independent rect. 6 21
740 17.65 radiation 20.0 10 < th dose dependent rect. 4 2
750 17.66 atmosphere 1000.0 10 > th dose independent rect. 16 11
762 17.67 humidity 80.0 10 > th dose independent rect. 3 3
783 17.69 temperature 10.0 1440 > th dose independent rect. 7 6
787 17.69 atmosphere 995.0 1440 > th dose independent rect. 7 6
797 17.69 temperature 10.0 1440 > th dose independent rect. 13 18
834 17.71 atmosphere 995.0 10 > th dose independent rect. 12 18
839 17.71 temperature 30.0 30 < th dose dependent rect. 4 1
840 17.71 atmosphere 1000.0 10 > th dose dependent rect. 3 3
852 17.71 wind 9.0 90 < th dose dependent rect. 12 18
864 17.72 wind 1.0 270 > th dose independent rect. 6 2
869 17.72 radiation 1.0 90 > th dose independent rect. 6 5
870 17.72 atmosphere 1005.0 270 > th dose independent rect. 23 6
890 17.73 radiation 1.0 90 > th dose independent sin 4 NA
917 17.73 wind 9.0 10 < th dose dependent rect. 3 3
928 17.74 wind 5.0 270 < th dose independent rect. 23 6
931 17.74 precipitation 0.1 90 < th dose independent rect. 3 14
945 17.74 precipitation 0.1 90 < th dose dependent rect. 3 14
952 17.75 humidity 50.0 270 > th dose independent rect. 1 13
957 17.75 radiation 10.0 10 < th dose independent rect. 7 20
965 17.75 humidity 50.0 10 > th dose dependent rect. 7 5
995 17.77 wind 1.0 270 > th dose independent rect. 23 6