BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0111800 Os09g0111800|AK069338
         (214 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05970.2  | chr1:1816253-1816991 REVERSE LENGTH=201            129   9e-31

>AT1G05970.2 | chr1:1816253-1816991 REVERSE LENGTH=201
          Length = 200

 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 107/186 (57%), Gaps = 1/186 (0%)

Query: 21  AYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIPSAALVEL 80
           AY  F ++V+RT+Y+D L+P  T+ V+ +A  Q   V  V FI NY  P ++P   LVE+
Sbjct: 8   AYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELPMGVLVEM 67

Query: 81  DDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWVKQEDGTE 140
           ++E   +A +  ++  PF++ GMPRPVRA  A+P+MF ++P  P     FRW+K  D  +
Sbjct: 68  ENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWIKPND-PD 126

Query: 141 YEGMKKLRILAKRQEAENMALIKNXXXXXXXXXXXXXXXXDGNYKKYDMLENVVQNGNMK 200
           ++  ++++ LA++  AEN  ++K                   ++KK++M++ ++ +G  +
Sbjct: 127 FDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLLYDGVAQ 186

Query: 201 SLAQHY 206
            LA  Y
Sbjct: 187 KLAGRY 192



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,262,627
Number of extensions: 160552
Number of successful extensions: 389
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)