Os02g0669700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os02g0669700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.29 | 0.551 | 6.15 | -3.5 | 0.23 | 1.46 | 1.09 | -3.4 | -0.824 | 10.4 | 25.58 | 1416 | -- | -- |
| 141.39 | 0.554 | 6.04 | -2.56 | 0.188 | 1.11 | 1.16 | -- | -0.624 | 10.2 | 25.39 | 1467 | -- | -- |
| 142.06 | 0.555 | 6.15 | -3.46 | 0.222 | 1.45 | -- | -3.37 | -0.838 | 10.1 | 25.4 | 1429 | -- | -- |
| 146.43 | 0.564 | 6.03 | -2.53 | 0.207 | 1.14 | -- | -- | -0.609 | 9.79 | 25.4 | 1499 | -- | -- |
| 144.9 | 0.561 | 6.15 | -3.44 | -- | 1.44 | -- | -3.3 | -0.829 | -- | 25.4 | 1467 | -- | -- |
| 197.02 | 0.658 | 6 | -2.16 | 0.175 | -- | 1.09 | -- | -0.489 | 9.46 | -- | -- | -- | -- |
| 201.26 | 0.664 | 6 | -2.12 | 0.182 | -- | -- | -- | -0.489 | 8.42 | -- | -- | -- | -- |
| 149.03 | 0.569 | 6.04 | -2.52 | -- | 1.14 | -- | -- | -0.61 | -- | 25.37 | 1505 | -- | -- |
| 299.98 | 0.807 | 5.93 | -- | 0.257 | 0.78 | -- | -- | -0.198 | 9.9 | 27.9 | 1873 | -- | -- |
| 203.1 | 0.666 | 6.01 | -2.12 | -- | -- | -- | -- | -0.487 | -- | -- | -- | -- | -- |
| 319.72 | 0.836 | 5.95 | -- | 0.177 | -- | -- | -- | -0.253 | 9.31 | -- | -- | -- | -- |
| 302.04 | 0.809 | 5.94 | -- | -- | 0.632 | -- | -- | -0.194 | -- | 28 | 1468 | -- | -- |
| 321.56 | 0.837 | 5.96 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 2 | 135.07 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 18 | 135.61 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 23 | 135.76 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 33 | 135.88 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 34 | 135.88 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 234 | 137.56 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 250 | 137.79 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 265 | 138.03 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 297 | 138.53 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 303 | 138.58 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 329 | 138.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 346 | 138.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 347 | 138.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 368 | 139.22 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 432 | 139.60 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 456 | 139.70 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 489 | 139.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 522 | 140.08 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 21 | NA |
| 584 | 140.40 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 690 | 141.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 749 | 141.46 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 776 | 141.71 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 832 | 142.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 873 | 142.29 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 884 | 142.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 934 | 142.62 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 943 | 142.67 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 957 | 142.73 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 969 | 142.81 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 996 | 142.95 | wind | 5.0 | 43200 | > th | dose independent | rect. | 14 | 22 |