BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0669700 Os02g0669700|AK064519
         (201 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05970.2  | chr1:1816253-1816991 REVERSE LENGTH=201            140   3e-34

>AT1G05970.2 | chr1:1816253-1816991 REVERSE LENGTH=201
          Length = 200

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 113/186 (60%), Gaps = 2/186 (1%)

Query: 10  GYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYDIPSAALVEL 69
            Y  F ERV+RT+Y+D L+P  T+ VI +A +Q   V  V FI NY  P ++P   LVE+
Sbjct: 8   AYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELPMGVLVEM 67

Query: 70  DDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQWVKQEDGIE 129
           ++E   +A I  ++  PF++ G PRPVRA  A+  MF+D+P +PG    F+W+K  D  +
Sbjct: 68  ENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWIKPNDP-D 126

Query: 130 YEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILDSDVMNDI-K 188
           ++   +++ LAR+   EN  ++K  LEE + L+KQQ E     +KK+ ++D  + + + +
Sbjct: 127 FDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLLYDGVAQ 186

Query: 189 NLSRRY 194
            L+ RY
Sbjct: 187 KLAGRY 192



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,426,365
Number of extensions: 184815
Number of successful extensions: 560
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)