BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0669700 Os02g0669700|AK064519
(201 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0669700 RNA-binding region RNP-1 (RNA recognition moti... 413 e-116
Os04g0689700 Nucleotide-binding, alpha-beta plait domain co... 314 3e-86
Os09g0111800 RNA-binding region RNP-1 (RNA recognition moti... 311 3e-85
Os07g0256200 RNA-binding region RNP-1 (RNA recognition moti... 174 6e-44
>Os02g0669700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 201
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MESDEDAKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYD 60
MESDEDAKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYD
Sbjct: 1 MESDEDAKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYD 60
Query: 61 IPSAALVELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQ 120
IPSAALVELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQ
Sbjct: 61 IPSAALVELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQ 120
Query: 121 WVKQEDGIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILD 180
WVKQEDGIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILD
Sbjct: 121 WVKQEDGIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILD 180
Query: 181 SDVMNDIKNLSRRYGVNLAGD 201
SDVMNDIKNLSRRYGVNLAGD
Sbjct: 181 SDVMNDIKNLSRRYGVNLAGD 201
>Os04g0689700 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 204
Score = 314 bits (804), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 152/198 (76%), Positives = 179/198 (90%), Gaps = 1/198 (0%)
Query: 3 SDEDAKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYDIP 62
SDEDAKK YADFE++VKRTIYIDHLSPQVTSSVI+AA++QC VV+V+FIVNYT+PYDIP
Sbjct: 4 SDEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPYDIP 63
Query: 63 SAALVELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQWV 122
SAALVELDDEIQAKAA+DLMN+FPFIIGG PRPVRAI AK EMF +RPP PGI+KEF+WV
Sbjct: 64 SAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEFRWV 123
Query: 123 KQEDGIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILDSD 182
KQEDG EY+GM KLR+LA+RQE ENMALIKN LEE+K+LAKQQQELLDG Y KY +L++
Sbjct: 124 KQEDGTEYQGMKKLRILAKRQEVENMALIKNQLEEEKELAKQQQELLDGNYNKYDMLENV 183
Query: 183 VMN-DIKNLSRRYGVNLA 199
V N ++K+L++ YGV+LA
Sbjct: 184 VQNGNMKSLAQHYGVSLA 201
>Os09g0111800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 214
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/198 (76%), Positives = 178/198 (89%), Gaps = 1/198 (0%)
Query: 3 SDEDAKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYDIP 62
S EDAKK YADFE++VKRTIYIDHLSPQVTSSV++AA++QCA VV+V+FIVNYTIPYDIP
Sbjct: 14 SHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIP 73
Query: 63 SAALVELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQWV 122
SAALVELDDEIQAKAA+DLMN+FPFIIGG PRPVRA AK +MF +RPP P IKKEF+WV
Sbjct: 74 SAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWV 133
Query: 123 KQEDGIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILDSD 182
KQEDG EYEGM KLR+LA+RQE ENMALIKN LEE+K+LAKQQQELLDG YKKY +L++
Sbjct: 134 KQEDGTEYEGMKKLRILAKRQEAENMALIKNQLEEEKELAKQQQELLDGNYKKYDMLENV 193
Query: 183 VMN-DIKNLSRRYGVNLA 199
V N ++K+L++ YGV+LA
Sbjct: 194 VQNGNMKSLAQHYGVSLA 211
>Os07g0256200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 858
Score = 174 bits (440), Expect = 6e-44, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Query: 7 AKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYDIPSAAL 66
A K Y +FEE+VKRT+Y+D+ S Q T SVI A++Q V ++F+VNYTIP+ IP +AL
Sbjct: 657 AIKQYQEFEEKVKRTVYLDYFSHQATESVIRTALNQFGTVREINFVVNYTIPFSIPQSAL 716
Query: 67 VELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQWVKQED 126
V ++ E A A ++++N FPF++ G PRPVRA A EMF DRP RPG K EF+WV D
Sbjct: 717 VIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATRATAEMFNDRPRRPGNKLEFRWVGPSD 776
Query: 127 GIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILDS 181
+Y + KL+L++RR E +N+AL+K+ LEE+ LAK Q+E+L+ +K ++DS
Sbjct: 777 A-DYHIVKKLKLMSRRHELDNLALVKHELEEEHFLAKHQEEILNCNQRKLEVMDS 830
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,795,473
Number of extensions: 282564
Number of successful extensions: 754
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 4
Length of query: 201
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 105
Effective length of database: 12,023,257
Effective search space: 1262441985
Effective search space used: 1262441985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)