Os04g0689700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os04g0689700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 193.69 | 0.654 | 5.28 | -3.17 | 1.36 | -1.73 | -0.137 | 0.685 | -0.868 | 8.59 | 24.21 | 8 | -- | -- |
| 193.82 | 0.653 | 5.29 | -3.27 | 1.36 | -1.68 | -0.0857 | -- | -0.9 | 8.54 | 24.23 | 7 | -- | -- |
| 193.6 | 0.653 | 5.28 | -3.18 | 1.37 | -1.74 | -- | 0.685 | -0.872 | 8.56 | 24.2 | 7 | -- | -- |
| 193.84 | 0.653 | 5.29 | -3.27 | 1.36 | -1.68 | -- | -- | -0.9 | 8.53 | 24.23 | 7 | -- | -- |
| 263.67 | 0.756 | 5.3 | -3.04 | -- | -2.05 | -- | 1.53 | -0.858 | -- | 24.2 | 277 | -- | -- |
| 235.02 | 0.719 | 5.33 | -3.55 | 1.56 | -- | 0.705 | -- | -1.09 | 6.8 | -- | -- | -- | -- |
| 236.25 | 0.72 | 5.33 | -3.53 | 1.56 | -- | -- | -- | -1.09 | 6.86 | -- | -- | -- | -- |
| 265.39 | 0.759 | 5.32 | -3.17 | -- | -1.84 | -- | -- | -0.866 | -- | 24.1 | 282 | -- | -- |
| 456.18 | 1 | 5.17 | -- | 1.44 | -2.54 | -- | -- | -0.351 | 9.56 | 22.38 | 15 | -- | -- |
| 363.57 | 0.891 | 5.37 | -3.5 | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
| 565.35 | 1.11 | 5.25 | -- | 1.52 | -- | -- | -- | -0.694 | 7 | -- | -- | -- | -- |
| 521.5 | 1.06 | 5.2 | -- | -- | -2.89 | -- | -- | -0.109 | -- | 17.76 | 373 | -- | -- |
| 686.7 | 1.22 | 5.28 | -- | -- | -- | -- | -- | -0.67 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 4 | 182.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 6 | 182.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 14 | 184.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 16 | 184.40 | temperature | 25 | 10 | > th | dose dependent | sin | 0 | NA |
| 20 | 184.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 22 | 185.17 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 30 | 185.84 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 10 |
| 32 | 186.04 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 15 |
| 58 | 186.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 60 | 186.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 73 | 187.14 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 9 |
| 76 | 187.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 82 | 187.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 105 | 187.78 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 125 | 188.23 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 15 |
| 135 | 188.72 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 137 | 188.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 144 | 189.04 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 146 | 189.19 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 152 | 189.35 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 17 |
| 154 | 189.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 194 | 190.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 195 | 190.21 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 202 | 190.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 208 | 190.43 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 223 | 190.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 224 | 190.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 311 | 191.82 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 321 | 191.91 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 14 |
| 379 | 192.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 390 | 192.62 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 7 |
| 410 | 192.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 522 | 193.98 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 10 |
| 524 | 194.00 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 11 |
| 536 | 194.06 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 540 | 194.12 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 544 | 194.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 569 | 194.35 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 600 | 194.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 607 | 194.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 614 | 194.73 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 619 | 194.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 682 | 195.16 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 18 |
| 702 | 195.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 864 | 196.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 934 | 196.69 | temperature | 25 | 90 | > th | dose independent | sin | 0 | NA |
| 937 | 196.70 | temperature | 25 | 90 | < th | dose independent | sin | 0 | NA |