BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0689700 Os04g0689700|AK066225
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0689700 Nucleotide-binding, alpha-beta plait domain co... 388 e-108
Os09g0111800 RNA-binding region RNP-1 (RNA recognition moti... 364 e-101
Os02g0669700 RNA-binding region RNP-1 (RNA recognition moti... 284 3e-77
Os07g0256200 RNA-binding region RNP-1 (RNA recognition moti... 161 4e-40
>Os04g0689700 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 204
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/204 (92%), Positives = 188/204 (92%)
Query: 1 MVTSDEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPY 60
MVTSDEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPY
Sbjct: 1 MVTSDEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPY 60
Query: 61 DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEF 120
DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEF
Sbjct: 61 DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEF 120
Query: 121 RWVKQEDGTEYQGMKKLRILAKRQEVENMALIKNXXXXXXXXXXXXXXXXDGNYNKYDML 180
RWVKQEDGTEYQGMKKLRILAKRQEVENMALIKN DGNYNKYDML
Sbjct: 121 RWVKQEDGTEYQGMKKLRILAKRQEVENMALIKNQLEEEKELAKQQQELLDGNYNKYDML 180
Query: 181 ENVVQNGNMKSLAQHYGVSLADEF 204
ENVVQNGNMKSLAQHYGVSLADEF
Sbjct: 181 ENVVQNGNMKSLAQHYGVSLADEF 204
>Os09g0111800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 214
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/204 (86%), Positives = 181/204 (88%)
Query: 1 MVTSDEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPY 60
MVTS EDAKKAYADFEKKVKRTIYIDHLSPQVTSSV+KAALAQC NVVDVEFIVNYT+PY
Sbjct: 11 MVTSHEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPY 70
Query: 61 DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEF 120
DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRA CAKP+MFRERPP P I+KEF
Sbjct: 71 DIPSAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEF 130
Query: 121 RWVKQEDGTEYQGMKKLRILAKRQEVENMALIKNXXXXXXXXXXXXXXXXDGNYNKYDML 180
RWVKQEDGTEY+GMKKLRILAKRQE ENMALIKN DGNY KYDML
Sbjct: 131 RWVKQEDGTEYEGMKKLRILAKRQEAENMALIKNQLEEEKELAKQQQELLDGNYKKYDML 190
Query: 181 ENVVQNGNMKSLAQHYGVSLADEF 204
ENVVQNGNMKSLAQHYGVSLADEF
Sbjct: 191 ENVVQNGNMKSLAQHYGVSLADEF 214
>Os02g0669700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 201
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/198 (70%), Positives = 164/198 (82%), Gaps = 1/198 (0%)
Query: 4 SDEDAKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPYDIP 63
SDEDAKK YADFE++VKRTIYIDHLSPQVTSSVI+AA++QC VV+V+FIVNYT+PYDIP
Sbjct: 3 SDEDAKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYDIP 62
Query: 64 SAALVELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEFRWV 123
SAALVELDDEIQAKAA+DLMN+FPFIIGG PRPVRAI AK EMF +RPP PGI+KEF+WV
Sbjct: 63 SAALVELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQWV 122
Query: 124 KQEDGTEYQGMKKLRILAKRQEVENMALIKNXXXXXXXXXXXXXXXXDGNYNKYDMLENV 183
KQEDG EY+GM KLR+LA+RQE ENMALIKN DG Y KY +L++
Sbjct: 123 KQEDGIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILDSD 182
Query: 184 VQNGNMKSLAQHYGVSLA 201
V N ++K+L++ YGV+LA
Sbjct: 183 VMN-DIKNLSRRYGVNLA 199
>Os07g0256200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 858
Score = 161 bits (407), Expect = 4e-40, Method: Composition-based stats.
Identities = 79/197 (40%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Query: 8 AKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPYDIPSAAL 67
A K Y +FE+KVKRT+Y+D+ S Q T SVI+ AL Q V ++ F+VNYT+P+ IP +AL
Sbjct: 657 AIKQYQEFEEKVKRTVYLDYFSHQATESVIRTALNQFGTVREINFVVNYTIPFSIPQSAL 716
Query: 68 VELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEFRWVKQED 127
V ++ E A A ++++N+FPF++ GMPRPVRA A EMF +RP PG + EFRWV D
Sbjct: 717 VIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATRATAEMFNDRPRRPGNKLEFRWVGPSD 776
Query: 128 GTEYQGMKKLRILAKRQEVENMALIKNXXXXXXXXXXXXXXXXDGNYNKYDMLENVVQNG 187
+Y +KKL+++++R E++N+AL+K+ + N K +++++++ G
Sbjct: 777 A-DYHIVKKLKLMSRRHELDNLALVKHELEEEHFLAKHQEEILNCNQRKLEVMDSIMLTG 835
Query: 188 NMKSLAQHYGVSLADEF 204
L Y V + + F
Sbjct: 836 KFTHLQHIYSVKVDEVF 852
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,425,733
Number of extensions: 250508
Number of successful extensions: 575
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)