Os07g0256200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os07g0256200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.32 | 0.551 | 6.06 | 0.65 | 0.179 | -0.483 | -0.778 | 0.432 | 0.158 | 2.67 | 1015 | 5158 | -- | -- |
| 138.21 | 0.548 | 6.07 | 0.568 | 0.176 | -0.478 | -0.707 | -- | 0.14 | 2.2 | 1015 | 5177 | -- | -- |
| 139.41 | 0.55 | 6.06 | 0.667 | 0.18 | -0.474 | -- | 0.425 | 0.159 | 2.22 | 1015 | 5176 | -- | -- |
| 140.02 | 0.551 | 6.06 | 0.62 | 0.176 | -0.518 | -- | -- | 0.149 | 2 | 1015 | 5181 | -- | -- |
| 141.26 | 0.554 | 6.06 | 0.671 | -- | -0.469 | -- | 0.403 | 0.164 | -- | 1015 | 5176 | -- | -- |
| 146.28 | 0.567 | 6.09 | 0.483 | 0.17 | -- | -0.701 | -- | 0.0541 | 2.42 | -- | -- | -- | -- |
| 148.04 | 0.57 | 6.08 | 0.502 | 0.168 | -- | -- | -- | 0.0585 | 1.99 | -- | -- | -- | -- |
| 141.73 | 0.554 | 6.06 | 0.63 | -- | -0.55 | -- | -- | 0.155 | -- | 1015 | 5123 | -- | -- |
| 148.27 | 0.567 | 6.08 | -- | 0.182 | -0.439 | -- | -- | 0.0761 | 1.83 | 1014 | 4651 | -- | -- |
| 149.73 | 0.572 | 6.08 | 0.509 | -- | -- | -- | -- | 0.0624 | -- | -- | -- | -- | -- |
| 154.69 | 0.582 | 6.1 | -- | 0.177 | -- | -- | -- | 0.00253 | 2.06 | -- | -- | -- | -- |
| 150.27 | 0.571 | 6.08 | -- | -- | -0.421 | -- | -- | 0.0678 | -- | 1014 | 4774 | -- | -- |
| 156.57 | 0.584 | 6.1 | -- | -- | -- | -- | -- | 0.00589 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 2 | 134.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 3 | 134.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 4 | 134.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 8 | 135.12 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 22 |
| 9 | 135.13 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 24 | 135.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 27 | 135.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 29 | 135.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 36 | 135.24 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 40 | 135.26 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 69 | 135.29 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 70 | 135.29 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 91 | 135.33 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 93 | 135.33 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 145 | 135.35 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 213 | 135.36 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 219 | 135.37 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 8 | 3 |
| 381 | 135.61 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 398 | 135.69 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 415 | 135.73 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 432 | 135.74 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 440 | 135.76 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 459 | 135.81 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 22 |
| 461 | 135.82 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 495 | 135.90 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 527 | 135.99 | humidity | 50.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 531 | 135.99 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 538 | 136.00 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 9 | 19 |
| 544 | 136.01 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 553 | 136.02 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 566 | 136.04 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 580 | 136.05 | humidity | 50.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 595 | 136.07 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 600 | 136.08 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 13 |
| 601 | 136.08 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 15 |
| 637 | 136.10 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 645 | 136.10 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 654 | 136.10 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 3 | 21 |
| 659 | 136.11 | humidity | 50.0 | 14400 | > th | dose independent | no | NA | NA |
| 767 | 136.15 | humidity | 60.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 827 | 136.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 885 | 136.26 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 893 | 136.27 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 906 | 136.28 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 907 | 136.28 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 920 | 136.29 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 925 | 136.29 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 958 | 136.37 | humidity | 50.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 961 | 136.37 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 9 | 9 |