BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0256200 Os07g0256200|AK072904
(858 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0256200 RNA-binding region RNP-1 (RNA recognition moti... 1708 0.0
Os04g0689700 Nucleotide-binding, alpha-beta plait domain co... 184 2e-46
Os09g0111800 RNA-binding region RNP-1 (RNA recognition moti... 181 2e-45
Os02g0669700 RNA-binding region RNP-1 (RNA recognition moti... 174 3e-43
>Os07g0256200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 858
Score = 1708 bits (4424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/828 (100%), Positives = 828/828 (100%)
Query: 31 LDSGGSAWIGTCVDSSSRWSIFCSKEMSASENQAAEASKGDDEKMDPPKMKIRIRLPPRK 90
LDSGGSAWIGTCVDSSSRWSIFCSKEMSASENQAAEASKGDDEKMDPPKMKIRIRLPPRK
Sbjct: 31 LDSGGSAWIGTCVDSSSRWSIFCSKEMSASENQAAEASKGDDEKMDPPKMKIRIRLPPRK 90
Query: 91 RLSNGLLKADMDGPDDRNNAQSSGVPVQTKSTIPSKQLTIPAAQCYASSISTSILWNEGN 150
RLSNGLLKADMDGPDDRNNAQSSGVPVQTKSTIPSKQLTIPAAQCYASSISTSILWNEGN
Sbjct: 91 RLSNGLLKADMDGPDDRNNAQSSGVPVQTKSTIPSKQLTIPAAQCYASSISTSILWNEGN 150
Query: 151 NNASSQTLPNEPNCDTSSDKLPEEASDSIPSKKLIIKAAQHYTSSISTGGLCNEANNNTS 210
NNASSQTLPNEPNCDTSSDKLPEEASDSIPSKKLIIKAAQHYTSSISTGGLCNEANNNTS
Sbjct: 151 NNASSQTLPNEPNCDTSSDKLPEEASDSIPSKKLIIKAAQHYTSSISTGGLCNEANNNTS 210
Query: 211 SKTLTNESNCDTSSDKLPEETIDNISSKVLTITAAQHQIDSISTGELCNEANNNTSRKIL 270
SKTLTNESNCDTSSDKLPEETIDNISSKVLTITAAQHQIDSISTGELCNEANNNTSRKIL
Sbjct: 211 SKTLTNESNCDTSSDKLPEETIDNISSKVLTITAAQHQIDSISTGELCNEANNNTSRKIL 270
Query: 271 TITAAQHQIDSISTGELCNEANNNTSSKILPNEPNCDISSDKQPEEANDTIPSKNLMITA 330
TITAAQHQIDSISTGELCNEANNNTSSKILPNEPNCDISSDKQPEEANDTIPSKNLMITA
Sbjct: 271 TITAAQHQIDSISTGELCNEANNNTSSKILPNEPNCDISSDKQPEEANDTIPSKNLMITA 330
Query: 331 GVCMDDVSNYSAKEGLCEDANDTIPSTNLMITAGVWGHDVSNYSAKEGLCEEANDIIPRK 390
GVCMDDVSNYSAKEGLCEDANDTIPSTNLMITAGVWGHDVSNYSAKEGLCEEANDIIPRK
Sbjct: 331 GVCMDDVSNYSAKEGLCEDANDTIPSTNLMITAGVWGHDVSNYSAKEGLCEEANDIIPRK 390
Query: 391 NLTIVDGVWEDDVSNYSTKEGLCEEANDTIPSKNLIITAGVWGDNVSNYSAKEGLCEETN 450
NLTIVDGVWEDDVSNYSTKEGLCEEANDTIPSKNLIITAGVWGDNVSNYSAKEGLCEETN
Sbjct: 391 NLTIVDGVWEDDVSNYSTKEGLCEEANDTIPSKNLIITAGVWGDNVSNYSAKEGLCEETN 450
Query: 451 DIIPRKNLTITAGVWGNDVSNYSAKEGLCEEANGNIPSNAHPATIKELPAKPLESTPSKN 510
DIIPRKNLTITAGVWGNDVSNYSAKEGLCEEANGNIPSNAHPATIKELPAKPLESTPSKN
Sbjct: 451 DIIPRKNLTITAGVWGNDVSNYSAKEGLCEEANGNIPSNAHPATIKELPAKPLESTPSKN 510
Query: 511 LTTIAMLGEEENNNPLRLFHETDINIPSKVVLPKKSKNNQRRNLVTTAVKCEEANNDPLS 570
LTTIAMLGEEENNNPLRLFHETDINIPSKVVLPKKSKNNQRRNLVTTAVKCEEANNDPLS
Sbjct: 511 LTTIAMLGEEENNNPLRLFHETDINIPSKVVLPKKSKNNQRRNLVTTAVKCEEANNDPLS 570
Query: 571 RRFSEDANRNIPTRNLSDKTKNNAQSNRPTNPDRKNNPQKKLSTTAVHAAPARKNTSEIK 630
RRFSEDANRNIPTRNLSDKTKNNAQSNRPTNPDRKNNPQKKLSTTAVHAAPARKNTSEIK
Sbjct: 571 RRFSEDANRNIPTRNLSDKTKNNAQSNRPTNPDRKNNPQKKLSTTAVHAAPARKNTSEIK 630
Query: 631 MANSEMKPSTSFGQAAEQGINLANLKAIKQYQEFEEKVKRTVYLDYFSHQATESVIRTAL 690
MANSEMKPSTSFGQAAEQGINLANLKAIKQYQEFEEKVKRTVYLDYFSHQATESVIRTAL
Sbjct: 631 MANSEMKPSTSFGQAAEQGINLANLKAIKQYQEFEEKVKRTVYLDYFSHQATESVIRTAL 690
Query: 691 NQFGTVREINFVVNYTIPFSIPQSALVIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATR 750
NQFGTVREINFVVNYTIPFSIPQSALVIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATR
Sbjct: 691 NQFGTVREINFVVNYTIPFSIPQSALVIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATR 750
Query: 751 ATAEMFNDRPRRPGNKLEFRWVGPSDADYHIVKKLKLMSRRHELDNLALVKHELEEEHFL 810
ATAEMFNDRPRRPGNKLEFRWVGPSDADYHIVKKLKLMSRRHELDNLALVKHELEEEHFL
Sbjct: 751 ATAEMFNDRPRRPGNKLEFRWVGPSDADYHIVKKLKLMSRRHELDNLALVKHELEEEHFL 810
Query: 811 AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVKVDEVFCNKWLV 858
AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVKVDEVFCNKWLV
Sbjct: 811 AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVKVDEVFCNKWLV 858
>Os04g0689700 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 204
Score = 184 bits (467), Expect = 2e-46, Method: Composition-based stats.
Identities = 89/197 (45%), Positives = 137/197 (69%), Gaps = 1/197 (0%)
Query: 657 AIKQYQEFEEKVKRTVYLDYFSHQATESVIRTALNQFGTVREINFVVNYTIPFSIPQSAL 716
A K Y +FE+KVKRT+Y+D+ S Q T SVI+ AL Q V ++ F+VNYT+P+ IP +AL
Sbjct: 8 AKKAYADFEKKVKRTIYIDHLSPQVTSSVIKAALAQCPNVVDVEFIVNYTVPYDIPSAAL 67
Query: 717 VIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATRATAEMFNDRPRRPGNKLEFRWVGPSD 776
V ++ E A A ++++N+FPF++ GMPRPVRA A EMF +RP PG + EFRWV D
Sbjct: 68 VELDDEIQAKAALDLMNDFPFIIGGMPRPVRAICAKPEMFRERPPHPGIRKEFRWVKQED 127
Query: 777 A-DYHIVKKLKLMSRRHELDNLALVKHELEEEHFLAKHQEEILNCNQRKLEVMDSIMLTG 835
+Y +KKL+++++R E++N+AL+K++LEEE LAK Q+E+L+ N K +++++++ G
Sbjct: 128 GTEYQGMKKLRILAKRQEVENMALIKNQLEEEKELAKQQQELLDGNYNKYDMLENVVQNG 187
Query: 836 KFTHLQHIYSVKVDEVF 852
L Y V + + F
Sbjct: 188 NMKSLAQHYGVSLADEF 204
>Os09g0111800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 214
Score = 181 bits (460), Expect = 2e-45, Method: Composition-based stats.
Identities = 89/197 (45%), Positives = 137/197 (69%), Gaps = 1/197 (0%)
Query: 657 AIKQYQEFEEKVKRTVYLDYFSHQATESVIRTALNQFGTVREINFVVNYTIPFSIPQSAL 716
A K Y +FE+KVKRT+Y+D+ S Q T SV++ AL Q V ++ F+VNYTIP+ IP +AL
Sbjct: 18 AKKAYADFEKKVKRTIYIDHLSPQVTSSVLKAALAQCANVVDVEFIVNYTIPYDIPSAAL 77
Query: 717 VIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATRATAEMFNDRPRRPGNKLEFRWVGPSD 776
V ++ E A A ++++N+FPF++ GMPRPVRAT A +MF +RP P K EFRWV D
Sbjct: 78 VELDDEIQAKAALDLMNDFPFIIGGMPRPVRATCAKPDMFRERPPCPDIKKEFRWVKQED 137
Query: 777 A-DYHIVKKLKLMSRRHELDNLALVKHELEEEHFLAKHQEEILNCNQRKLEVMDSIMLTG 835
+Y +KKL+++++R E +N+AL+K++LEEE LAK Q+E+L+ N +K +++++++ G
Sbjct: 138 GTEYEGMKKLRILAKRQEAENMALIKNQLEEEKELAKQQQELLDGNYKKYDMLENVVQNG 197
Query: 836 KFTHLQHIYSVKVDEVF 852
L Y V + + F
Sbjct: 198 NMKSLAQHYGVSLADEF 214
>Os02g0669700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 201
Score = 174 bits (440), Expect = 3e-43, Method: Composition-based stats.
Identities = 86/175 (49%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Query: 657 AIKQYQEFEEKVKRTVYLDYFSHQATESVIRTALNQFGTVREINFVVNYTIPFSIPQSAL 716
A K Y +FEE+VKRT+Y+D+ S Q T SVI A++Q V ++F+VNYTIP+ IP +AL
Sbjct: 7 AKKGYADFEERVKRTIYIDHLSPQVTSSVIEAAISQCARVVNVDFIVNYTIPYDIPSAAL 66
Query: 717 VIMETEKDAVAVVNMLNEFPFMMSGMPRPVRATRATAEMFNDRPRRPGNKLEFRWVGPSD 776
V ++ E A A ++++N FPF++ G PRPVRA A EMF DRP RPG K EF+WV D
Sbjct: 67 VELDDEIQAKAAIDLMNNFPFIIGGKPRPVRAIYAKHEMFLDRPPRPGIKKEFQWVKQED 126
Query: 777 A-DYHIVKKLKLMSRRHELDNLALVKHELEEEHFLAKHQEEILNCNQRKLEVMDS 830
+Y + KL+L++RR E +N+AL+K+ LEE+ LAK Q+E+L+ +K ++DS
Sbjct: 127 GIEYEGMNKLRLLARRQETENMALIKNLLEEDKDLAKQQQELLDGIYKKYCILDS 181
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.125 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,858,051
Number of extensions: 1175927
Number of successful extensions: 2994
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2923
Number of HSP's successfully gapped: 4
Length of query: 858
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 749
Effective length of database: 11,344,475
Effective search space: 8497011775
Effective search space used: 8497011775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)