BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0561600 Os08g0561600|AK066884
(577 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0561600 Protein of unknown function DUF966 family protein 951 0.0
Os03g0692400 Protein of unknown function DUF966 family protein 177 3e-44
Os01g0839200 Protein of unknown function DUF966 family protein 150 3e-36
Os03g0192300 Protein of unknown function DUF966 family protein 127 3e-29
Os09g0571000 Protein of unknown function DUF966 family protein 115 1e-25
Os01g0975000 Protein of unknown function DUF966 family protein 91 2e-18
>Os08g0561600 Protein of unknown function DUF966 family protein
Length = 577
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/543 (87%), Positives = 474/543 (87%)
Query: 16 SPGRNKVWVEPPGKTHHLRXXXXXXXXXXXKRVAVVYYLCRNRHLEHPHFIEVPLASPDG 75
SPGRNKVWVEPPGKTHHLR KRVAVVYYLCRNRHLEHPHFIEVPLASPDG
Sbjct: 16 SPGRNKVWVEPPGKTHHLRSPPPPPSPSSSKRVAVVYYLCRNRHLEHPHFIEVPLASPDG 75
Query: 76 LYLRDVINRLNVLRGKGMAAMYSWSCKSRSYKNGFVWHDLSEDDLVLPAQGNEYILKGSE 135
LYLRDVINRLNVLRGKGMAAMYSWSCKSRSYKNGFVWHDLSEDDLVLPAQGNEYILKGSE
Sbjct: 76 LYLRDVINRLNVLRGKGMAAMYSWSCKSRSYKNGFVWHDLSEDDLVLPAQGNEYILKGSE 135
Query: 136 LLDRSPPDRQQNGVGEPKVETLKHPPEESPHXXXXXXXXXXXXXXXAVTKEXXXXXXXXX 195
LLDRSPPDRQQNGVGEPKVETLKHPPEESPH AVTKE
Sbjct: 136 LLDRSPPDRQQNGVGEPKVETLKHPPEESPHSRGSQEGCSSSSSPSAVTKEASPPPPTPQ 195
Query: 196 XXXXXXXXXXXXXXXXXXNREDDQCRTPRSGSSGNMSPEPAGRVAPPLSEASSPGPLEYR 255
NREDDQCRTPRSGSSGNMSPEPAGRVAPPLSEASSPGPLEYR
Sbjct: 196 PQQQAQSATLLPSSSASTNREDDQCRTPRSGSSGNMSPEPAGRVAPPLSEASSPGPLEYR 255
Query: 256 VCKPIGAQDASTQTDDSERDAPERNSRMAGVCTENSTSDSEIQECHPRSTQPSPKGPGVV 315
VCKPIGAQDASTQTDDSERDAPERNSRMAGVCTENSTSDSEIQECHPRSTQPSPKGPGVV
Sbjct: 256 VCKPIGAQDASTQTDDSERDAPERNSRMAGVCTENSTSDSEIQECHPRSTQPSPKGPGVV 315
Query: 316 RESPPVCSSDASPGGRVETLESLIXXXXXXXXXXXXXXXXHLFAPMGVKFKPANLLMQLI 375
RESPPVCSSDASPGGRVETLESLI HLFAPMGVKFKPANLLMQLI
Sbjct: 316 RESPPVCSSDASPGGRVETLESLIRAEASRRSSFRALEEEHLFAPMGVKFKPANLLMQLI 375
Query: 376 TCGSISVKDHRSFGLIPTYRPRFTQVEFPSPMFSTPLALRHLDNIPCNARTIGMRIPESE 435
TCGSISVKDHRSFGLIPTYRPRFTQVEFPSPMFSTPLALRHLDNIPCNARTIGMRIPESE
Sbjct: 376 TCGSISVKDHRSFGLIPTYRPRFTQVEFPSPMFSTPLALRHLDNIPCNARTIGMRIPESE 435
Query: 436 YFSGSLVETKKQDESGKGGTPTLKRSSSCSEDRVCRVSDSNRDMESMAESGSFRCLPQTI 495
YFSGSLVETKKQDESGKGGTPTLKRSSSCSEDRVCRVSDSNRDMESMAESGSFRCLPQTI
Sbjct: 436 YFSGSLVETKKQDESGKGGTPTLKRSSSCSEDRVCRVSDSNRDMESMAESGSFRCLPQTI 495
Query: 496 KMISCKQSRSGTILSPNSDVRNSCSRQECSTRSSPLGSSKSASNRMTDLSLGKLSSSRVE 555
KMISCKQSRSGTILSPNSDVRNSCSRQECSTRSSPLGSSKSASNRMTDLSLGKLSSSRVE
Sbjct: 496 KMISCKQSRSGTILSPNSDVRNSCSRQECSTRSSPLGSSKSASNRMTDLSLGKLSSSRVE 555
Query: 556 SFH 558
SFH
Sbjct: 556 SFH 558
>Os03g0692400 Protein of unknown function DUF966 family protein
Length = 521
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 182/355 (51%), Gaps = 28/355 (7%)
Query: 216 EDD---QCRTPRSGSSGNMSPEPAGRVAPPLSEASSPGPLEYRVCKPIGAQDASTQTDD- 271
EDD QCR S NMSPE + LS A S P E+RV KP G DA+TQTDD
Sbjct: 170 EDDSPVQCRV---TSLENMSPESEPQRTL-LSRAGSASPAEFRVYKPTGCVDAATQTDDL 225
Query: 272 ---SERDAPERNSRMAGVCTENSTSDSEIQECHPRSTQP--SPKGPGVVRESPPVCS--- 323
S R PE + + + T++ + EI E R +QP S + G+ RE+ C
Sbjct: 226 GRRSVRKVPEMHKK--SLSTDHDSVVREITEY--RQSQPRRSAELQGIAREAMSQCHTPL 281
Query: 324 SDASPGGRVETLESLIXXXXXXXXXXXXXXXXHLFAPMGVKFKPANLLMQLITCGSISVK 383
S S G+ E+LESLI + P K +PAN+LMQLITCGS+SVK
Sbjct: 282 SIPSSRGKSESLESLIRADNNALNSFRILEEDDIIMPTCPKLRPANVLMQLITCGSLSVK 341
Query: 384 DHRSFGLIPTYRPRFTQVEFPSPMFSTPLALRHLDNIPCNARTIGMRIPESEYFSGSLVE 443
DH + L+ Y+PRF ++FPSP+ S + + LD + N R +GMR+ + EYFSGSL+E
Sbjct: 342 DHENIRLVEGYKPRFPNMKFPSPLISRTMMMGELDYLSENPRLMGMRLEDKEYFSGSLIE 401
Query: 444 TKKQDESGKGGTPTLKRSSSCSEDRVCRVSDSNRDMESMAESGSFRCLPQTIKMISCKQS 503
TK Q + LKRSSS + +R D R E + RCLP+T + S
Sbjct: 402 TKMQRDVPADRYSALKRSSSYNAERSNETLDCARPDEDTVNTSRARCLPRTPILSSFLHP 461
Query: 504 RSGTILSPNSDVRNSCSRQ-ECSTRSSPLGSSKSASNRMTDLSLGKLSSSRVESF 557
+S + SP SD R S S +CS L SS S R D + SR++SF
Sbjct: 462 KSEAMKSPISDCRRSSSAGPDCS-----LASSGDGSKRFIDATGAP--GSRIDSF 509
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/95 (77%), Positives = 86/95 (90%), Gaps = 1/95 (1%)
Query: 46 KRVAVVYYLCRNRHLEHPHFIEVPLASPDGLYLRDVINRLNVLRGKGMAAMYSWSCKSRS 105
++V VVYYL R+RHLEHPHF+EVP++SP+GLYLRDVI+ LN++RGKGMAAMYSWSCK RS
Sbjct: 19 RKVPVVYYLTRSRHLEHPHFVEVPVSSPEGLYLRDVISHLNMVRGKGMAAMYSWSCK-RS 77
Query: 106 YKNGFVWHDLSEDDLVLPAQGNEYILKGSELLDRS 140
YKNGFVWHDL EDDLV PA EY+LKGSELLD+S
Sbjct: 78 YKNGFVWHDLGEDDLVHPATDGEYVLKGSELLDQS 112
>Os01g0839200 Protein of unknown function DUF966 family protein
Length = 411
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
Query: 50 VVYYLCRNRHLEHPHFIEVPLASPDGLYLRDVINRLNVLRGKGMAAMYSWSCKSRSYKNG 109
VVYYL RN HLEHPHF+EV +ASPDGLYLRDVI+RL+ LRGKGMA MYSW+ K RSY+NG
Sbjct: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASK-RSYRNG 106
Query: 110 FVWHDLSEDDLVLPAQGNEYILKGSELL 137
FVWHDL++DD + P G EY+LKG+E L
Sbjct: 107 FVWHDLADDDYIYPVAGREYVLKGTERL 134
>Os03g0192300 Protein of unknown function DUF966 family protein
Length = 345
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
Query: 46 KRVAVVYYLCRNRHLEHPHFIEVPLASPDGLYLRDVINRLNVLRGKGMAAMYSWSCKSRS 105
++V ++YYLCRN LEHPHF+E+ L L+DV++RL +LRGKGM A++SWSCK R+
Sbjct: 38 RKVQIIYYLCRNGQLEHPHFMELAQHPHQPLRLKDVMDRLTLLRGKGMPALFSWSCK-RN 96
Query: 106 YKNGFVWHDLSEDDLVLPAQGNEYILKGSELLDRSPPDR 144
YKNG+VW+DLSE+D++ P+ G EY+LKGSE+ DR
Sbjct: 97 YKNGYVWNDLSENDVIYPSDGVEYVLKGSEIFPGCSSDR 135
>Os09g0571000 Protein of unknown function DUF966 family protein
Length = 480
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 71/99 (71%), Gaps = 13/99 (13%)
Query: 48 VAVVYYLCRNRH--LEHPHFIEVPLASPDG-------LYLRDVINRLNVLRGKGMAAMYS 98
VAVVYYLCR+R LEHPH +EV + DG L LRDV RL+ LRGKGMAAMYS
Sbjct: 38 VAVVYYLCRSRQGGLEHPHLMEVEVG--DGEEQVHVQLRLRDVTRRLDALRGKGMAAMYS 95
Query: 99 WSCKSRSYKNGFVWHDLSE-DDLVLPAQGNEYILKGSEL 136
WSCK RSY+ G+VWHDLS DDL+LP ++Y+LK S L
Sbjct: 96 WSCK-RSYRGGYVWHDLSHPDDLLLPTGPHDYVLKASLL 133
>Os01g0975000 Protein of unknown function DUF966 family protein
Length = 342
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 62/101 (61%), Gaps = 11/101 (10%)
Query: 48 VAVVYYLCR-NRHLEHPHFIEVPLASPDG-------LYLRDVINRLNVLRGKGMAAMYSW 99
V VVYYLCR + L+HPHF+ V + S L+LRD I RL+ LRG M A YSW
Sbjct: 39 VGVVYYLCRQDGQLDHPHFVHVHVPSDSDSDHPRPRLHLRDFIARLSDLRGAAMPAAYSW 98
Query: 100 SCKSRSYKN-GFVWHDLSEDDLVLPAQGN--EYILKGSELL 137
S K+ +N G+VW DL+ DDL+ N EY+LKGS LL
Sbjct: 99 SAKTTYRRNAGYVWQDLTADDLIPAPSTNHEEYVLKGSPLL 139
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,814,707
Number of extensions: 806209
Number of successful extensions: 2112
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2098
Number of HSP's successfully gapped: 7
Length of query: 577
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 471
Effective length of database: 11,501,117
Effective search space: 5417026107
Effective search space used: 5417026107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)