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Os01g0839200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF966 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.09 (0.0946) R2 : 0.693
β1 : 0.338 (0.484) R2dD : 0.00145 R2D : -0.363
β2 : 1.68 (0.171) R2dC : 0.0654 R2C : -0.252
β3 : -9.13 (0.62) R2dE : 0.696 R2E : -0.55
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -35.2 (1.38) R2dD*E : 1.14 R2D*E : -0.015
γ1 : 0.00263 (0.186) R2dN8 : 2.87e-06 R2N8 : -0.332
σ : 1.31
deviance : 793.82
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C
peak time of C : 2.19
E
wheather : radiation
threshold : 9.548
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
792.32 1.32 9.1 0.177 1.78 -9.16 1.26 -35.5 -0.0186 2.15 16.31 4320 18 11.4
1455.63 1.78 7.58 0.459 1.84 -7.73 1.83 -- 0.561 2.2 24.52 4321 17 11.8
793.82 1.31 9.09 0.338 1.68 -9.13 -- -35.2 0.00263 2.19 9.548 4320 18 11.4
1352.02 1.71 7.58 0.614 1.87 -7.49 -- -- 0.631 2.73 29.13 47520 17.7 9.31
901.22 1.4 9.03 0.34 -- -8.92 -- -35.2 0.0339 -- 8.779 4316 18 11.4
1851.06 2.02 7.61 -4.1 1.93 -- 1.27 -- 0.496 2.82 -- -- -- --
1856.46 2.02 7.61 -4.13 1.93 -- -- -- 0.489 2.73 -- -- -- --
1118.59 1.56 7.5 0.65 -- -7.27 -- -- 0.504 -- 3.997 4306 17.4 12.1
1343.71 1.71 7.6 -- 2.11 -7.37 -- -- 0.609 1.58 270.1 47520 17.8 8.27
2072.6 2.13 7.6 -4.05 -- -- -- -- 0.538 -- -- -- -- --
2306.04 2.25 7.51 -- 1.85 -- -- -- 0.949 2.71 -- -- -- --
1047.52 1.51 7.61 -- -- -7.92 -- -- 0.511 -- 3.736 4303 17.4 12.1
2504.83 2.34 7.5 -- -- -- -- -- 0.987 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 726.04 humidity 90.0 43200 > th dose dependent rect. 21 1
6 743.14 humidity 90.0 43200 < th dose independent rect. 20 1
9 748.48 humidity 90.0 43200 > th dose independent rect. 20 2
41 773.37 wind 5.0 43200 > th dose independent rect. 11 1
42 773.49 radiation 10.0 14400 < th dose independent rect. 16 14
46 774.74 radiation 40.0 14400 < th dose dependent rect. 18 11
49 776.03 wind 5.0 43200 < th dose independent rect. 11 1
72 787.34 humidity 90.0 43200 > th dose independent rect. 9 1
73 787.50 radiation 10.0 14400 < th dose independent rect. 16 11
75 787.58 radiation 10.0 14400 < th dose independent rect. 16 9
77 787.67 radiation 10.0 14400 < th dose independent rect. 16 3
85 787.95 radiation 20.0 14400 < th dose dependent rect. 18 1
93 788.73 radiation 1.0 14400 > th dose dependent rect. 17 13
103 789.56 radiation 10.0 14400 < th dose dependent rect. 18 5
124 792.79 radiation 30.0 14400 < th dose independent rect. 15 17
137 796.80 humidity 90.0 43200 < th dose independent rect. 9 2
161 804.71 radiation 1.0 14400 > th dose dependent rect. 17 2
190 809.54 humidity 90.0 43200 > th dose dependent rect. 8 16
201 811.26 humidity 90.0 43200 < th dose independent rect. 9 14
208 812.34 humidity 90.0 43200 > th dose independent rect. 8 16
210 812.53 radiation 1.0 14400 < th dose independent rect. 18 11
225 815.45 humidity 90.0 43200 < th dose independent rect. 8 17
237 816.72 humidity 90.0 43200 < th dose independent sin 18 NA
247 817.00 atmosphere 1005.0 43200 > th dose independent rect. 16 1
256 817.50 radiation 20.0 14400 > th dose dependent rect. 16 15
259 817.85 humidity 80.0 43200 > th dose dependent rect. 10 1
277 818.43 radiation 40.0 14400 < th dose dependent rect. 17 13
287 818.97 atmosphere 1005.0 43200 < th dose independent rect. 17 1
288 819.09 atmosphere 1005.0 43200 > th dose independent rect. 16 3
293 819.33 humidity 90.0 43200 > th dose dependent sin 18 NA
296 819.41 radiation 1.0 14400 > th dose independent rect. 17 2
327 819.80 wind 5.0 43200 < th dose independent rect. 5 1
365 822.54 wind 3.0 43200 > th dose dependent rect. 11 1
370 822.90 radiation 1.0 14400 > th dose independent rect. 17 13
379 823.34 humidity 80.0 43200 > th dose independent rect. 12 1
392 823.91 humidity 90.0 43200 > th dose dependent rect. 5 19
408 824.92 humidity 90.0 43200 > th dose independent rect. 4 20
420 826.01 humidity 80.0 43200 < th dose independent rect. 12 1
428 826.43 humidity 90.0 43200 > th dose independent sin 18 NA
431 826.65 radiation 1.0 14400 < th dose independent rect. 17 17
445 826.82 radiation 10.0 14400 < th dose independent sin 14 NA
454 827.66 wind 5.0 43200 < th dose independent rect. 5 9
463 828.14 temperature 20.0 43200 > th dose independent rect. 19 2
472 828.74 radiation 1.0 1440 < th dose dependent rect. 15 15
477 828.88 wind 5.0 43200 > th dose independent rect. 5 9
501 830.50 radiation 1.0 14400 > th dose independent rect. 17 17
587 832.96 humidity 90.0 43200 > th dose independent rect. 17 20
608 833.82 radiation 1.0 1440 < th dose dependent rect. 8 22
658 836.10 temperature 25.0 14400 < th dose independent rect. 15 14
667 836.30 temperature 25.0 14400 < th dose independent rect. 14 16
699 837.14 temperature 20.0 43200 < th dose independent rect. 20 1
703 837.26 humidity 90.0 43200 < th dose independent rect. 17 20
713 837.72 temperature 25.0 14400 > th dose independent rect. 15 14
728 837.98 humidity 80.0 43200 > th dose independent rect. 10 5
731 837.98 radiation 30.0 14400 > th dose dependent rect. 15 17
753 838.15 humidity 80.0 43200 > th dose independent rect. 11 7
788 839.36 humidity 70.0 14400 < th dose independent rect. 19 1
803 839.71 precipitation 0.1 43200 > th dose independent rect. 16 3
811 839.92 precipitation 0.1 43200 < th dose independent rect. 16 3
812 839.92 precipitation 0.1 43200 < th dose dependent rect. 16 3
820 840.22 wind 5.0 43200 > th dose independent rect. 5 1
823 840.29 temperature 20.0 43200 < th dose independent rect. 19 3
855 840.92 radiation 1.0 4320 < th dose independent rect. 8 22
860 840.99 temperature 25.0 14400 < th dose independent sin 14 NA
884 841.40 radiation 1.0 1440 < th dose dependent sin 13 NA
895 841.80 temperature 25.0 14400 > th dose independent sin 14 NA
915 841.99 radiation 1.0 4320 > th dose independent rect. 8 22
929 842.32 humidity 90.0 43200 > th dose independent no NA NA
934 842.48 wind 5.0 43200 > th dose dependent rect. 10 3
975 843.45 humidity 90.0 43200 > th dose independent rect. 11 23
988 843.79 radiation 1.0 14400 < th dose dependent rect. 17 17
993 843.90 radiation 1.0 14400 > th dose independent rect. 5 1
1000 844.14 radiation 1.0 4320 > th dose independent sin 14 NA