BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0839200 Os01g0839200|AK068926
(411 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0839200 Protein of unknown function DUF966 family protein 602 e-172
Os08g0561600 Protein of unknown function DUF966 family protein 148 7e-36
Os03g0692400 Protein of unknown function DUF966 family protein 140 1e-33
Os03g0192300 Protein of unknown function DUF966 family protein 120 2e-27
Os09g0571000 Protein of unknown function DUF966 family protein 104 1e-22
Os01g0975000 Protein of unknown function DUF966 family protein 82 5e-16
>Os01g0839200 Protein of unknown function DUF966 family protein
Length = 411
Score = 602 bits (1553), Expect = e-172, Method: Compositional matrix adjust.
Identities = 307/411 (74%), Positives = 307/411 (74%)
Query: 1 MAVVVAGSRGKGEQQRLPWREAQQEARCPDMXXXXXXXXXXXXXXXXVVYYLSRNGHLEH 60
MAVVVAGSRGKGEQQRLPWREAQQEARCPDM VVYYLSRNGHLEH
Sbjct: 1 MAVVVAGSRGKGEQQRLPWREAQQEARCPDMAPSRPPRPRPGPARAAVVYYLSRNGHLEH 60
Query: 61 PHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGFVWHDLADDDYIYP 120
PHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGFVWHDLADDDYIYP
Sbjct: 61 PHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGFVWHDLADDDYIYP 120
Query: 121 VAGREYVLKGTERLHPIQLPLLDXXXXXXXXXXXXXXXXXXPPGWENGTGEARQKKGAGI 180
VAGREYVLKGTERLHPIQLPLLD PPGWENGTGEARQKKGAGI
Sbjct: 121 VAGREYVLKGTERLHPIQLPLLDAAAASSCSSGSQETATSSPPGWENGTGEARQKKGAGI 180
Query: 181 NTSELCEYRVYKXXXXXXXXXXXXTQTEDGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
NTSELCEYRVYK TQTEDGY
Sbjct: 181 NTSELCEYRVYKAEDPAAAAADAATQTEDGYRSSRGRHAQRAAAAAAQEELSREETSPPT 240
Query: 241 XXXXXXXLEALIKADGRVMAAVTGGGRTRASSVLMQLISCGSVSVKSTLASPVMXXXXXX 300
LEALIKADGRVMAAVTGGGRTRASSVLMQLISCGSVSVKSTLASPVM
Sbjct: 241 ASTSPETLEALIKADGRVMAAVTGGGRTRASSVLMQLISCGSVSVKSTLASPVMARTAAH 300
Query: 301 XXXXXXXXXXXXXXXXEIPNYRQKIVEDKEYFSGSLVETKRSSPADTSQDIAVLRRSSSY 360
EIPNYRQKIVEDKEYFSGSLVETKRSSPADTSQDIAVLRRSSSY
Sbjct: 301 YRPRPPRPPTLASTTTEIPNYRQKIVEDKEYFSGSLVETKRSSPADTSQDIAVLRRSSSY 360
Query: 361 NADRVQKVEPSTEAVDMHDRCIPRRPRGKKDGGAYLISGGNGQYGSKRHGG 411
NADRVQKVEPSTEAVDMHDRCIPRRPRGKKDGGAYLISGGNGQYGSKRHGG
Sbjct: 361 NADRVQKVEPSTEAVDMHDRCIPRRPRGKKDGGAYLISGGNGQYGSKRHGG 411
>Os08g0561600 Protein of unknown function DUF966 family protein
Length = 577
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASK-RSYRNG 106
VVYYL RN HLEHPHF+EV +ASPDGLYLRDVI+RL+ LRGKGMA MYSW+ K RSY+NG
Sbjct: 50 VVYYLCRNRHLEHPHFIEVPLASPDGLYLRDVINRLNVLRGKGMAAMYSWSCKSRSYKNG 109
Query: 107 FVWHDLADDDYIYPVAGREYVLKGTERL 134
FVWHDL++DD + P G EY+LKG+E L
Sbjct: 110 FVWHDLSEDDLVLPAQGNEYILKGSELL 137
>Os03g0692400 Protein of unknown function DUF966 family protein
Length = 521
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 73/87 (83%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGF 107
VVYYL+R+ HLEHPHF+EV V+SP+GLYLRDVI L+ +RGKGMA MYSW+ KRSY+NGF
Sbjct: 23 VVYYLTRSRHLEHPHFVEVPVSSPEGLYLRDVISHLNMVRGKGMAAMYSWSCKRSYKNGF 82
Query: 108 VWHDLADDDYIYPVAGREYVLKGTERL 134
VWHDL +DD ++P EYVLKG+E L
Sbjct: 83 VWHDLGEDDLVHPATDGEYVLKGSELL 109
>Os03g0192300 Protein of unknown function DUF966 family protein
Length = 345
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 67/85 (78%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGF 107
++YYL RNG LEHPHFME+A L L+DV+DRL LRGKGM ++SW+ KR+Y+NG+
Sbjct: 42 IIYYLCRNGQLEHPHFMELAQHPHQPLRLKDVMDRLTLLRGKGMPALFSWSCKRNYKNGY 101
Query: 108 VWHDLADDDYIYPVAGREYVLKGTE 132
VW+DL+++D IYP G EYVLKG+E
Sbjct: 102 VWNDLSENDVIYPSDGVEYVLKGSE 126
>Os09g0571000 Protein of unknown function DUF966 family protein
Length = 480
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 63/94 (67%), Gaps = 12/94 (12%)
Query: 48 VVYYL--SRNGHLEHPHFMEVAVASPDG-------LYLRDVIDRLDALRGKGMARMYSWA 98
VVYYL SR G LEHPH MEV V DG L LRDV RLDALRGKGMA MYSW+
Sbjct: 40 VVYYLCRSRQGGLEHPHLMEVEVG--DGEEQVHVQLRLRDVTRRLDALRGKGMAAMYSWS 97
Query: 99 SKRSYRNGFVWHDLAD-DDYIYPVAGREYVLKGT 131
KRSYR G+VWHDL+ DD + P +YVLK +
Sbjct: 98 CKRSYRGGYVWHDLSHPDDLLLPTGPHDYVLKAS 131
>Os01g0975000 Protein of unknown function DUF966 family protein
Length = 342
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 48 VVYYLSR-NGHLEHPHFMEVAVASPDG-------LYLRDVIDRLDALRGKGMARMYSWAS 99
VVYYL R +G L+HPHF+ V V S L+LRD I RL LRG M YSW++
Sbjct: 41 VVYYLCRQDGQLDHPHFVHVHVPSDSDSDHPRPRLHLRDFIARLSDLRGAAMPAAYSWSA 100
Query: 100 KRSYRN--GFVWHDLADDDYI-YPVAGR-EYVLKGTERLH 135
K +YR G+VW DL DD I P EYVLKG+ LH
Sbjct: 101 KTTYRRNAGYVWQDLTADDLIPAPSTNHEEYVLKGSPLLH 140
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,670,722
Number of extensions: 419348
Number of successful extensions: 1005
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 998
Number of HSP's successfully gapped: 6
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)