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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0975000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF966 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.59 (0.051) R2 : 0.339
β1 : 0.839 (0.191) R2dD : 0.0332 R2D : 0.0174
β2 : 1.75 (0.131) R2dC : 0.263 R2C : 0.236
β3 : 0.35 (0.335) R2dE : 0.00159 R2E : 0.00549
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -18.4 (2.66) R2dD*E : 0.0759 R2D*E : 0.0379
γ1 : -0.0962 (0.111) R2dN8 : 0.00157 R2N8 : 0.0042
σ : 0.949
deviance : 414.78
__
_____
C
peak time of C : 7.54
E
wheather : atmosphere
threshold : 995
memory length : 12
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.02
open length of G : 23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
409.68 0.951 5.59 0.839 1.75 0.311 1.36 -18.5 -0.0962 7.54 995 11 3.02 23
437.61 0.974 5.58 0.543 1.72 1.63 1.34 -- -0.109 7.47 993 46 3.25 22.7
414.78 0.949 5.59 0.839 1.75 0.35 -- -18.4 -0.0962 7.54 995 12 3.02 23
442.36 0.98 5.58 0.572 1.71 1.69 -- -- -0.0925 7.54 993.2 42 3.28 22.7
575.84 1.12 5.63 0.799 -- 0.0151 -- -16.9 -0.0957 -- 994.8 16 3 23.1
457.1 1 5.61 0.542 1.67 -- 1.28 -- -0.22 7.79 -- -- -- --
461.71 1.01 5.61 0.576 1.66 -- -- -- -0.22 7.87 -- -- -- --
461.38 1 5.62 0.759 -- -1.35 -- -- -0.146 -- 994.9 505 5.77 20.6
451.05 0.989 5.6 -- 1.72 1.64 -- -- -0.17 7.55 993.6 43 3.27 22.7
612.13 1.16 5.65 0.595 -- -- -- -- -0.198 -- -- -- -- --
470.47 1.01 5.62 -- 1.67 -- -- -- -0.285 7.84 -- -- -- --
468.7 1.01 5.63 -- -- -1.4 -- -- -0.171 -- 994.8 503 5.75 20.6
621.47 1.16 5.67 -- -- -- -- -- -0.264 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 409.84 atmosphere 995.0 10 > th dose independent rect. 3 23
3 415.80 wind 5.0 90 < th dose independent rect. 7 22
10 421.63 wind 9.0 270 < th dose dependent rect. 6 21
21 423.10 temperature 25.0 90 > th dose independent rect. 1 3
27 423.61 temperature 25.0 90 > th dose dependent rect. 1 3
28 423.62 temperature 25.0 10 < th dose independent rect. 2 1
36 424.10 wind 1.0 10 < th dose independent rect. 2 1
39 424.23 wind 9.0 10 < th dose dependent rect. 2 1
40 424.23 temperature 10.0 10 > th dose dependent rect. 2 1
44 424.27 atmosphere 1015.0 30 < th dose dependent rect. 2 1
45 424.31 wind 5.0 10 < th dose independent rect. 2 1
49 424.42 temperature 30.0 30 < th dose dependent rect. 2 1
51 424.50 radiation 1.0 43200 < th dose dependent rect. 3 1
53 424.56 temperature 10.0 10 > th dose independent rect. 2 1
56 424.56 humidity 50.0 10 > th dose independent rect. 2 1
59 424.56 atmosphere 995.0 10 > th dose independent rect. 2 1
60 424.56 atmosphere 1010.0 10 < th dose independent rect. 2 1
62 424.56 radiation 1.0 10 < th dose independent rect. 2 1
67 424.56 precipitation 0.1 10 < th dose independent rect. 2 1
68 424.56 temperature 10.0 10 > th dose independent rect. 3 23
69 424.56 radiation 1.0 10 < th dose dependent rect. 2 1
74 424.56 precipitation 0.1 10 < th dose dependent rect. 2 1
78 424.62 atmosphere 995.0 10 > th dose dependent rect. 2 1
102 424.66 atmosphere 1005.0 10 > th dose independent rect. 2 1
107 424.78 wind 1.0 30 < th dose dependent rect. 2 1
110 424.83 humidity 50.0 30 > th dose dependent rect. 2 1
142 425.75 wind 1.0 30 > th dose independent rect. 2 1
145 426.14 wind 5.0 90 < th dose independent rect. 11 17
147 426.30 atmosphere 1005.0 270 > th dose independent rect. 23 3
164 427.19 wind 5.0 270 < th dose independent rect. 7 11
171 427.38 wind 5.0 90 < th dose independent rect. 8 9
183 427.67 atmosphere 1005.0 270 > th dose dependent rect. 24 2
187 427.82 radiation 1.0 4320 < th dose dependent rect. 3 1
201 428.24 wind 9.0 270 < th dose dependent rect. 15 12
208 428.48 temperature 25.0 10 > th dose independent rect. 9 8
229 429.02 wind 5.0 270 < th dose independent rect. 20 23
232 429.07 wind 9.0 1440 < th dose independent rect. 3 1
233 429.07 temperature 10.0 1440 > th dose independent rect. 3 1
236 429.07 temperature 30.0 1440 < th dose independent rect. 3 1
240 429.07 humidity 50.0 1440 > th dose independent rect. 3 1
249 429.07 atmosphere 995.0 1440 > th dose independent rect. 3 1
250 429.07 radiation 1.0 1440 < th dose independent rect. 3 1
270 429.07 temperature 10.0 1440 > th dose independent rect. 4 23
281 429.13 wind 5.0 270 < th dose independent rect. 15 12
286 429.17 wind 9.0 270 < th dose dependent rect. 7 11
291 429.29 wind 3.0 270 > th dose dependent rect. 11 22
305 429.61 atmosphere 995.0 90 > th dose independent rect. 7 22
320 429.81 wind 3.0 270 > th dose dependent rect. 14 23
333 430.03 atmosphere 1005.0 10 > th dose independent rect. 24 5
337 430.11 wind 5.0 270 < th dose independent rect. 22 14
339 430.13 wind 3.0 270 > th dose dependent rect. 24 22
351 430.26 wind 7.0 90 < th dose dependent rect. 11 17
359 430.34 wind 3.0 90 > th dose dependent sin 17 NA
383 430.69 wind 3.0 270 > th dose dependent rect. 21 23
385 430.73 wind 3.0 270 > th dose dependent no NA NA
404 430.96 wind 5.0 270 > th dose independent rect. 14 23
416 431.04 wind 5.0 90 < th dose independent rect. 13 15
449 431.30 wind 7.0 90 < th dose independent sin 10 NA
450 431.31 wind 5.0 270 > th dose independent rect. 10 23
471 431.52 wind 5.0 270 > th dose independent rect. 20 23
479 431.57 temperature 20.0 10 > th dose dependent rect. 1 4
483 431.60 wind 1.0 30 < th dose dependent rect. 21 6
498 431.69 wind 9.0 1440 < th dose independent rect. 5 5
504 431.71 wind 3.0 270 > th dose dependent rect. 16 23
507 431.75 wind 1.0 30 < th dose independent rect. 24 3
524 431.83 wind 5.0 90 < th dose independent sin 18 NA
536 431.88 wind 5.0 270 > th dose independent rect. 24 23
538 431.89 wind 5.0 270 > th dose independent no NA NA
539 431.89 wind 5.0 270 > th dose independent rect. 16 23
543 431.90 wind 5.0 270 > th dose independent rect. 6 23
573 432.01 precipitation 0.1 10 < th dose independent rect. 3 23
574 432.01 precipitation 0.1 10 < th dose dependent rect. 3 23
575 432.02 wind 5.0 270 < th dose independent no NA NA
599 432.15 wind 5.0 270 > th dose independent rect. 2 23
611 432.25 wind 1.0 30 < th dose dependent rect. 24 3
637 432.35 atmosphere 1005.0 90 > th dose dependent rect. 24 5
666 432.48 wind 5.0 270 < th dose independent rect. 17 23
685 432.54 wind 3.0 90 > th dose dependent rect. 11 12
768 432.82 wind 5.0 90 > th dose dependent rect. 17 16
772 432.83 wind 1.0 30 < th dose dependent rect. 11 16
816 432.97 wind 5.0 90 > th dose dependent rect. 17 18
827 433.01 wind 9.0 270 < th dose dependent sin 19 NA
834 433.03 wind 9.0 270 < th dose dependent rect. 11 15
856 433.08 wind 7.0 90 < th dose dependent rect. 13 15
863 433.11 wind 7.0 90 > th dose dependent sin 10 NA
903 433.25 atmosphere 1000.0 10 > th dose dependent rect. 24 5
904 433.26 humidity 90.0 270 < th dose independent rect. 23 3
923 433.34 wind 1.0 10 < th dose independent rect. 21 6
964 433.46 wind 3.0 4320 < th dose independent rect. 5 1