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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0692400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF966 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.75 (0.0523) R2 : 0.408
β1 : 1.12 (0.269) R2dD : 0.0587 R2D : -0.0897
β2 : 0.978 (0.111) R2dC : 0.102 R2C : 0.109
β3 : -1.87 (0.17) R2dE : 0.182 R2E : 0.152
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.16 (0.795) R2dD*E : 0.268 R2D*E : -0.0364
γ1 : 0.285 (0.113) R2dN8 : 0.0144 R2N8 : -0.00294
σ : 0.868
deviance : 347.56
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_____
C
peak time of C : 0.658
E
wheather : temperature
threshold : 49.98
memory length : 1462
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.02
open length of G : 1.76

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
346.84 0.875 4.75 1.14 0.978 -1.89 -0.484 -7.27 0.274 0.574 44.92 1462 6.02 1.78
443.31 0.981 4.89 0.389 0.951 -1.89 0.907 -- 0.179 0.47 36.11 1501 6.62 0.666
347.56 0.868 4.75 1.12 0.978 -1.87 -- -7.16 0.285 0.658 49.98 1462 6.02 1.76
415.39 0.949 4.89 -0.612 1.02 -1.82 -- -- 0.169 0.411 43.32 1481 6.82 0.584
406.95 0.94 4.75 1.1 -- -2.02 -- -7.14 0.267 -- 52.16 1461 6.05 1.76
504.94 1.05 4.89 -0.0921 1.12 -- -0.165 -- 0.17 0.397 -- -- -- --
505.06 1.05 4.89 -0.0858 1.12 -- -- -- 0.171 0.397 -- -- -- --
427.41 0.963 5 -0.641 -- -2.64 -- -- -0.222 -- 33.63 1888 7.22 3.48
422.5 0.957 4.89 -- 1.04 -1.65 -- -- 0.0456 0.396 41.83 1481 6.83 0.588
584.17 1.13 4.87 -0.0477 -- -- -- -- 0.189 -- -- -- -- --
505.25 1.05 4.89 -- 1.12 -- -- -- 0.181 0.394 -- -- -- --
425.36 0.961 4.93 -- -- -2.61 -- -- -0.0229 -- 34 2004 5.33 4.15
584.23 1.13 4.87 -- -- -- -- -- 0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 355.22 temperature 30 1440 < th dose dependent rect. 6 2
2 355.29 temperature 20 1440 > th dose dependent rect. 6 2
31 361.85 radiation 1 14400 < th dose dependent rect. 17 1
34 362.21 temperature 15 1440 > th dose dependent rect. 4 7
40 362.27 temperature 10 1440 > th dose dependent rect. 4 10
73 363.16 temperature 25 43200 > th dose independent rect. 17 1
81 363.32 radiation 1 4320 < th dose dependent rect. 17 13
88 363.45 radiation 1 14400 > th dose independent rect. 16 2
94 363.57 temperature 25 43200 < th dose independent rect. 17 1
95 363.58 temperature 10 1440 > th dose dependent sin 3 NA
107 363.72 radiation 1 14400 > th dose independent rect. 17 12
128 363.85 radiation 1 4320 < th dose independent rect. 17 13
133 363.86 radiation 1 4320 < th dose dependent rect. 11 19
134 363.92 radiation 1 14400 < th dose independent rect. 17 1
150 364.07 radiation 1 4320 < th dose dependent rect. 15 15
154 364.12 radiation 1 14400 > th dose independent sin 16 NA
156 364.15 radiation 1 14400 > th dose independent rect. 12 6
167 364.23 radiation 1 14400 < th dose independent rect. 17 10
169 364.24 radiation 1 14400 < th dose independent rect. 17 3
172 364.25 radiation 1 14400 < th dose independent rect. 17 8
268 364.65 temperature 25 43200 < th dose dependent rect. 21 1
293 364.76 radiation 1 14400 > th dose independent rect. 9 22
318 364.97 temperature 25 43200 < th dose dependent rect. 17 7
325 365.00 temperature 25 43200 < th dose dependent rect. 17 11
329 365.01 temperature 25 43200 < th dose dependent rect. 15 14
384 365.13 temperature 25 43200 < th dose dependent sin 15 NA
390 365.15 radiation 1 4320 < th dose independent rect. 10 20
391 365.15 radiation 1 14400 < th dose independent rect. 9 22
422 365.24 radiation 1 14400 < th dose independent sin 15 NA
478 365.42 temperature 25 43200 < th dose dependent rect. 3 1
487 365.43 temperature 30 43200 < th dose dependent rect. 17 1
492 365.44 radiation 1 14400 < th dose independent rect. 12 6
620 365.83 temperature 20 43200 > th dose dependent rect. 17 1
754 366.03 temperature 25 43200 < th dose dependent rect. 17 23
755 366.04 temperature 25 43200 < th dose dependent no NA NA
756 366.04 temperature 10 43200 > th dose dependent rect. 4 1
771 366.07 temperature 25 43200 < th dose dependent rect. 23 23
777 366.09 temperature 25 43200 < th dose dependent rect. 1 23
778 366.09 temperature 25 43200 < th dose dependent rect. 19 23
971 366.47 temperature 30 43200 < th dose independent rect. 15 1
994 366.51 radiation 1 43200 < th dose dependent rect. 8 11
1000 366.51 radiation 1 43200 < th dose dependent rect. 8 21