BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0692400 Os03g0692400|AK101780
(521 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28150.1 | chr2:12000015-12002227 FORWARD LENGTH=541 345 4e-95
AT5G59790.1 | chr5:24090950-24092804 FORWARD LENGTH=424 149 3e-36
AT3G46110.1 | chr3:16932244-16933588 FORWARD LENGTH=344 142 3e-34
AT5G10150.1 | chr5:3182176-3183834 REVERSE LENGTH=415 134 2e-31
AT1G05577.1 | chr1:1662643-1664288 REVERSE LENGTH=373 111 1e-24
>AT2G28150.1 | chr2:12000015-12002227 FORWARD LENGTH=541
Length = 540
Score = 345 bits (885), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 222/510 (43%), Positives = 303/510 (59%), Gaps = 30/510 (5%)
Query: 20 KVPVVYYLTRSRHLEHPHFVEVPVSSPEGLYLRDVISHLNMVRGKGMAAMYSWSCKRSYK 79
KV +VYYL+++R LEHPHF+EV +SSP GLYLRDVI LN++RG+GMA+MYSWS KRSY+
Sbjct: 33 KVQIVYYLSKNRQLEHPHFMEVLISSPNGLYLRDVIERLNVLRGRGMASMYSWSSKRSYR 92
Query: 80 NGFVWHDLGEDDLVHPATDGEYVLKGSELLDQSSSGQFYQGTNGNQKQQSRLKEGARLPL 139
NGFVWHDL EDDL+ PA EYVLKGSEL D+S+S F N + +K+ P
Sbjct: 93 NGFVWHDLSEDDLILPANGNEYVLKGSELFDESNSDHFSPIVNLATQN---MKQIVVEP- 148
Query: 140 PREASYSSSPPSVIVREAKPRRSPSVPSLEEDD--SPVQCRVTSLENMSPESEPQRTLLS 197
P S S S + K S EDD SP R S +SP+S +
Sbjct: 149 PSSRSMDDSSSSSSMNNGKGTNKHS----HEDDELSPPALRSVSSSGVSPDSRDAKN--- 201
Query: 198 RAGSASPAEFRVYKPTGCVDAATQTDDLGRRSVRKVPEMHKKSLSTDHDSVVREITEYRQ 257
+ S AE++VYK G DA+TQTD+ + E + +STD D V E +
Sbjct: 202 -SSSWCLAEYKVYKSEGLADASTQTDETVSGRSKTPIETFSRGVSTDED--VSSEPETSE 258
Query: 258 SQPRRSAELQGIAREAMSQCHTPLSIPSSR------GKSESLESLIRADNNALNSFRILE 311
+ A G RE+ +S P S GK+++LESLIRAD + +NSFRILE
Sbjct: 259 NNLVSEASCAGKERESAEISRNSVSPPFSNSASSLGGKTDTLESLIRADVSKMNSFRILE 318
Query: 312 EDDIIMPTCPKLRPANVLMQLITCGSLSVKDHENIRLVEGYKPRFPNMKFPSPLISRTMM 371
++D+ MP P+LR +N+LMQLI+CGS+SVKD+ N LV YKP+F + KFPSP S + M
Sbjct: 319 QEDVRMPAIPRLRASNMLMQLISCGSISVKDN-NFGLVPTYKPKFGHSKFPSPFFSSSFM 377
Query: 372 MGELDYLSENPRLMGMRLEDKEYFSGSLIETKMQRDVPADRYSALKRSSSYNAERSNETL 431
MG+LD LSE P LMG+R+E+KEYFSGSL+ETK+Q+ AD ++LKRSSSYN +R++ +
Sbjct: 378 MGDLDRLSETPSLMGLRMEEKEYFSGSLVETKLQKKDAADSNASLKRSSSYNGDRASNQM 437
Query: 432 DCARPDEDTVNTSRARCLPRTPILSSFLHPKSEAMKSPISDCRRSSSAGPDCSLASSGDG 491
A + ++S+ P + SS L + + D ++ C+ +
Sbjct: 438 GVAENGDSKPDSSKNN--PSSRKASSILGKQQPLVSEKRRDSSEDTTKNIPCTTKTHDAC 495
Query: 492 SKRFIDATGAPGSRIDSFRK-EEKLVKIEE 520
SKR ++ P DSFR+ EE+++KI+E
Sbjct: 496 SKRITESLRKP----DSFREDEERVIKIDE 521
>AT5G59790.1 | chr5:24090950-24092804 FORWARD LENGTH=424
Length = 423
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 76/91 (83%)
Query: 20 KVPVVYYLTRSRHLEHPHFVEVPVSSPEGLYLRDVISHLNMVRGKGMAAMYSWSCKRSYK 79
KVPVVYYL R+ L+HPHF+EV +SS +GLYL+DVI+ LN +RGKGMA++YSWS KRSYK
Sbjct: 46 KVPVVYYLCRNGQLDHPHFIEVTLSSHDGLYLKDVINRLNDLRGKGMASLYSWSSKRSYK 105
Query: 80 NGFVWHDLGEDDLVHPATDGEYVLKGSELLD 110
NGFVWHDL EDD + P EYVLKGSE+LD
Sbjct: 106 NGFVWHDLSEDDFIFPVQGQEYVLKGSEVLD 136
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 22/170 (12%)
Query: 291 ESLESLIRADNNAL-------NSFRILEEDDIIMPTCPKLRPANVLMQLITCGSLSVKDH 343
E+LE+LI+AD + R +E + ++R + VLMQLI+CG++S K+
Sbjct: 257 ETLENLIKADGRLILRPSESSTDHRTVES-----LSSGRMRASAVLMQLISCGTMSFKEC 311
Query: 344 ENIRLVEGYKPRFPNMKFPSPLISRTMMMGELDYLSENPRLMGMRLEDKEYFSGSLIETK 403
+ L + + N + + GE E ++LEDKEYFSGSLIETK
Sbjct: 312 GPVLLKD--QGLALNGRSGCTITRGAEDNGEERVDKELKSFGRVQLEDKEYFSGSLIETK 369
Query: 404 MQRDVPADRYSALKRSSSYNAERSNETLDCARPDEDTVNTSRARCLPRTP 453
+ VP ALKRSSSYNA+R + DE+ RA+C+PR P
Sbjct: 370 KEL-VP-----ALKRSSSYNADRCSRMGPTTEKDEE--EAVRAKCIPRKP 411
>AT3G46110.1 | chr3:16932244-16933588 FORWARD LENGTH=344
Length = 343
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 21 VPVVYYLTRSRHLEHPHFVEVPVSSPEGLYLRDVISHLNMVRGKGMAAMYSWSCKRSYKN 80
VPVVYYL+R+ L+HPHF+EVP+SS GLYL+DVI+ LN +RG GMA +YSWS KR+YKN
Sbjct: 20 VPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVINRLNDLRGNGMACLYSWSSKRTYKN 79
Query: 81 GFVWHDLGEDDLVHPATDGEYVLKGSELLD-QSSSGQF 117
GFVW+DL ++D + P EYVLKGS++LD ++SG F
Sbjct: 80 GFVWYDLSDEDFIFPVHGQEYVLKGSQILDLDNNSGNF 117
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 125/263 (47%), Gaps = 66/263 (25%)
Query: 202 ASPAEFRVYKPTGC---------VDAATQTDDLGRRSVRKVPEMHKKSLSTDHDSVVREI 252
+S ++VYK + +DA+TQTDD R RK P D V E+
Sbjct: 129 SSVDHYKVYKASELNAEATRKLSMDASTQTDD---RRRRKSP--------VDE---VNEV 174
Query: 253 TEYRQSQPRRSAELQGIAREAMSQCHTPLSIPSSRGKSESLESLIRADNNALNSFRILEE 312
TE ++RE ++ S P S E+LESL+RAD + +L+E
Sbjct: 175 TE--------------LSREEIT------SPPQSDSSPETLESLMRADGRLI----LLQE 210
Query: 313 DDIIMPTCPKLRPANVLMQLITCGSLSVKDHENIRLVEGYKPRFPNMKFPSPLISRTMMM 372
D + T K+RP+ VLMQLI+CG++S K P N S + R
Sbjct: 211 DQELNRTVEKMRPSAVLMQLISCGAMSFKK---------CGPTLMNGNTRSTAV-RGTGN 260
Query: 373 GELDYLSENPRLMG-MRLEDKEYFSGSLIETKMQRD-VPADRYSALKRSSSYNAERSNET 430
L+ + + G ++LE+KEYFSGSLI+ +++ VP ALKRSSSYN +RS+
Sbjct: 261 YRLERAEKELKSFGRVKLEEKEYFSGSLIDESSKKELVP-----ALKRSSSYNIDRSSRM 315
Query: 431 LDCARPDEDTVNTSRARCLPRTP 453
+++ +RA +PR P
Sbjct: 316 --GLTKEKEGEELARANFIPRNP 336
>AT5G10150.1 | chr5:3182176-3183834 REVERSE LENGTH=415
Length = 414
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 91/130 (70%), Gaps = 6/130 (4%)
Query: 20 KVPVVYYLTRSRHLEHPHFVEV--PVSSPEGLYLRDVISHLNMVRGKGMAAMYSWSCKRS 77
+V VVYYLTR+ HLEHPHF+EV PV+ P L LRDV++ L ++RGK M + Y+WSCKRS
Sbjct: 45 RVQVVYYLTRNGHLEHPHFIEVISPVNQP--LRLRDVMNRLTILRGKCMTSQYAWSCKRS 102
Query: 78 YKNGFVWHDLGEDDLVHPATDGEYVLKGSELLDQSSSGQFYQGTNGNQKQ--QSRLKEGA 135
Y+NGFVW+DL E+D+++P+ EYVLKGSE+ D+ + +G+ ++ +SRL
Sbjct: 103 YRNGFVWNDLAENDVIYPSDCAEYVLKGSEITDKFQEVHVNRPLSGSIQEAPKSRLLRSK 162
Query: 136 RLPLPREASY 145
P R AS+
Sbjct: 163 LKPQNRTASF 172
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 84/140 (60%), Gaps = 13/140 (9%)
Query: 326 ANVLMQLITCGSLSVKDHENIRLVEGYKPRFPNMK---FPSPLISRTMMMGE---LDYLS 379
++ +Q+I+CG ++ K + V + + N++ ++ +T++ E + ++S
Sbjct: 274 GSMWLQMISCGHIATKYYAP--SVMNPRQKEENLRKGVLCKNIVKKTVVDDEREMIRFMS 331
Query: 380 ENPRLMGMRLEDKEYFSGSLIETKMQRDVPADRYSALKRSSSYNAERSNETLDCAR--PD 437
ENPR + E+KEYFSGS++E+ Q V A+ +L+RS+S+N ERS + ++ A+
Sbjct: 332 ENPRFGNPQAEEKEYFSGSIVESVSQERVTAE--PSLRRSNSFNEERS-KIVEMAKETKK 388
Query: 438 EDTVNTSRARCLPRTPILSS 457
++ + ++ +C+PRT ++SS
Sbjct: 389 KEERSMAKVKCIPRTCLMSS 408
>AT1G05577.1 | chr1:1662643-1664288 REVERSE LENGTH=373
Length = 372
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 64/90 (71%)
Query: 20 KVPVVYYLTRSRHLEHPHFVEVPVSSPEGLYLRDVISHLNMVRGKGMAAMYSWSCKRSYK 79
+V +VY+L+RS H++HPH + V S G++LRDV L RG M +SWSCKR YK
Sbjct: 12 RVNLVYFLSRSGHVDHPHLLRVHHLSRNGVFLRDVKKWLADARGDAMPDAFSWSCKRRYK 71
Query: 80 NGFVWHDLGEDDLVHPATDGEYVLKGSELL 109
NG+VW DL +DDL+ P +D EYVLKGSE+L
Sbjct: 72 NGYVWQDLLDDDLITPISDNEYVLKGSEIL 101
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,475,034
Number of extensions: 519268
Number of successful extensions: 1293
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 8
Length of query: 521
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,282,721
Effective search space: 3462177378
Effective search space used: 3462177378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)