BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0839200 Os01g0839200|AK068926
(411 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59790.1 | chr5:24090950-24092804 FORWARD LENGTH=424 209 2e-54
AT2G28150.1 | chr2:12000015-12002227 FORWARD LENGTH=541 152 4e-37
AT3G46110.1 | chr3:16932244-16933588 FORWARD LENGTH=344 142 4e-34
AT5G10150.1 | chr5:3182176-3183834 REVERSE LENGTH=415 125 3e-29
AT1G05577.1 | chr1:1662643-1664288 REVERSE LENGTH=373 103 1e-22
>AT5G59790.1 | chr5:24090950-24092804 FORWARD LENGTH=424
Length = 423
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 191/387 (49%), Gaps = 56/387 (14%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGF 107
VVYYL RNG L+HPHF+EV ++S DGLYL+DVI+RL+ LRGKGMA +YSW+SKRSY+NGF
Sbjct: 49 VVYYLCRNGQLDHPHFIEVTLSSHDGLYLKDVINRLNDLRGKGMASLYSWSSKRSYKNGF 108
Query: 108 VWHDLADDDYIYPVAGREYVLKGTERLHPIQLPLLDXXXXXXXXXXXXXXXXXXPPGWEN 167
VWHDL++DD+I+PV G+EYVLKG+E L L+ P +
Sbjct: 109 VWHDLSEDDFIFPVQGQEYVLKGSEVLDSC---LISNPRSLLETSSFRDPRSLNP---DK 162
Query: 168 GTGE-----ARQKKGAGINTSELCEYRVYKXXXXXXXXXX-----XXTQTEDGYXXXXXX 217
+G+ +++ ++ +L EY+VYK TQT+D
Sbjct: 163 NSGDDIPAVINRRRNQSWSSIDLSEYKVYKATESSAESTQRLAADASTQTDDRRRRRRPA 222
Query: 218 XXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXLEALIKADGRVM------------ 259
LE LIKADGR++
Sbjct: 223 KEEIEEVKSPASYENQSTELSRDEISPPPSDSSPETLENLIKADGRLILRPSESSTDHRT 282
Query: 260 AAVTGGGRTRASSVLMQLISCGSVSVKSTLASPVMXXXXXX--------XXXXXXXXXXX 311
GR RAS+VLMQLISCG++S K PV+
Sbjct: 283 VESLSSGRMRASAVLMQLISCGTMSFKE--CGPVLLKDQGLALNGRSGCTITRGAEDNGE 340
Query: 312 XXXXXEIPNYRQKIVEDKEYFSGSLVETKRSSPADTSQDIAVLRRSSSYNADRVQKVEPS 371
E+ ++ + +EDKEYFSGSL+ETK+ + + L+RSSSYNADR ++ P+
Sbjct: 341 ERVDKELKSFGRVQLEDKEYFSGSLIETKK-------ELVPALKRSSSYNADRCSRMGPT 393
Query: 372 TEAVD---MHDRCIPRRPR--GKKDGG 393
TE + + +CIPR+P+ K++ G
Sbjct: 394 TEKDEEEAVRAKCIPRKPKPVAKRNNG 420
>AT2G28150.1 | chr2:12000015-12002227 FORWARD LENGTH=541
Length = 540
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 75/85 (88%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGF 107
+VYYLS+N LEHPHFMEV ++SP+GLYLRDVI+RL+ LRG+GMA MYSW+SKRSYRNGF
Sbjct: 36 IVYYLSKNRQLEHPHFMEVLISSPNGLYLRDVIERLNVLRGRGMASMYSWSSKRSYRNGF 95
Query: 108 VWHDLADDDYIYPVAGREYVLKGTE 132
VWHDL++DD I P G EYVLKG+E
Sbjct: 96 VWHDLSEDDLILPANGNEYVLKGSE 120
>AT3G46110.1 | chr3:16932244-16933588 FORWARD LENGTH=344
Length = 343
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 79/87 (90%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGF 107
VVYYLSRNG L+HPHF+EV ++S +GLYL+DVI+RL+ LRG GMA +YSW+SKR+Y+NGF
Sbjct: 22 VVYYLSRNGRLDHPHFIEVPLSSHNGLYLKDVINRLNDLRGNGMACLYSWSSKRTYKNGF 81
Query: 108 VWHDLADDDYIYPVAGREYVLKGTERL 134
VW+DL+D+D+I+PV G+EYVLKG++ L
Sbjct: 82 VWYDLSDEDFIFPVHGQEYVLKGSQIL 108
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 248 LEALIKADGRVMAAVTGG--GRT----RASSVLMQLISCGSVSVKSTLASPVMXXXXXXX 301
LE+L++ADGR++ RT R S+VLMQLISCG++S K +M
Sbjct: 195 LESLMRADGRLILLQEDQELNRTVEKMRPSAVLMQLISCGAMSFKKC-GPTLMNGNTRST 253
Query: 302 XXXXXXXXXXXXXXXEIPNYRQKIVEDKEYFSGSLVETKRSSPADTSQDIAVLRRSSSYN 361
E+ ++ + +E+KEYFSGSL++ + + + L+RSSSYN
Sbjct: 254 AVRGTGNYRLERAEKELKSFGRVKLEEKEYFSGSLIDE-----SSKKELVPALKRSSSYN 308
Query: 362 ADRVQKV 368
DR ++
Sbjct: 309 IDRSSRM 315
>AT5G10150.1 | chr5:3182176-3183834 REVERSE LENGTH=415
Length = 414
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 65/85 (76%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGF 107
VVYYL+RNGHLEHPHF+EV L LRDV++RL LRGK M Y+W+ KRSYRNGF
Sbjct: 48 VVYYLTRNGHLEHPHFIEVISPVNQPLRLRDVMNRLTILRGKCMTSQYAWSCKRSYRNGF 107
Query: 108 VWHDLADDDYIYPVAGREYVLKGTE 132
VW+DLA++D IYP EYVLKG+E
Sbjct: 108 VWNDLAENDVIYPSDCAEYVLKGSE 132
>AT1G05577.1 | chr1:1662643-1664288 REVERSE LENGTH=373
Length = 372
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 61/87 (70%)
Query: 48 VVYYLSRNGHLEHPHFMEVAVASPDGLYLRDVIDRLDALRGKGMARMYSWASKRSYRNGF 107
+VY+LSR+GH++HPH + V S +G++LRDV L RG M +SW+ KR Y+NG+
Sbjct: 15 LVYFLSRSGHVDHPHLLRVHHLSRNGVFLRDVKKWLADARGDAMPDAFSWSCKRRYKNGY 74
Query: 108 VWHDLADDDYIYPVAGREYVLKGTERL 134
VW DL DDD I P++ EYVLKG+E L
Sbjct: 75 VWQDLLDDDLITPISDNEYVLKGSEIL 101
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,896,940
Number of extensions: 236615
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 7
Length of query: 411
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,337,553
Effective search space: 2584641430
Effective search space used: 2584641430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)