BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0558000 Os08g0558000|AK061522
         (126 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0558000  Similar to 60S ribosomal protein L10a-3             233   2e-62
Os08g0558800  Similar to 60S ribosomal protein L10a-3             203   2e-53
Os02g0321900  Similar to 60S ribosomal protein L10a-1             161   1e-40
Os01g0860300  Ribosomal protein L1 family protein                 160   3e-40
AK108883                                                          127   2e-30
AK119934                                                          120   3e-28

>Os08g0558000 Similar to 60S ribosomal protein L10a-3
          Length = 126

 Score =  233 bits (594), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/126 (89%), Positives = 113/126 (89%)

Query: 1   EDXXXXXXXXXXXXXVPCFLSIRGHHQADPPSPWSWSKQGRQFPTLVTHQESLESKVNET 60
           ED             VPCFLSIRGHHQADPPSPWSWSKQGRQFPTLVTHQESLESKVNET
Sbjct: 1   EDEQEQEACEEACQEVPCFLSIRGHHQADPPSPWSWSKQGRQFPTLVTHQESLESKVNET 60

Query: 61  KATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMG 120
           KATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMG
Sbjct: 61  KATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMG 120

Query: 121 KPYRVF 126
           KPYRVF
Sbjct: 121 KPYRVF 126



>Os08g0558800 Similar to 60S ribosomal protein L10a-3
          Length = 116

 Score =  203 bits (517), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/111 (96%), Positives = 108/111 (97%)

Query: 16  VPCFLSIRGHHQADPPSPWSWSKQGRQFPTLVTHQESLESKVNETKATVKFQLKKVLCMG 75
           VPCFLSIRGHHQAD  SPWSWS+QGRQFPTLVTHQESLESKVNETKATVKFQLKKVLCMG
Sbjct: 6   VPCFLSIRGHHQADSSSPWSWSQQGRQFPTLVTHQESLESKVNETKATVKFQLKKVLCMG 65

Query: 76  VAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 126
           VAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKP RVF
Sbjct: 66  VAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 116



>Os02g0321900 Similar to 60S ribosomal protein L10a-1
          Length = 216

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/85 (91%), Positives = 82/85 (96%)

Query: 42  QFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVS 101
           +FPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGN +MEEKQI QN+QMSVNFLVS
Sbjct: 132 KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVS 191

Query: 102 LLKKNWQNVRCLYIKSTMGKPYRVF 126
           LLKKNWQNVRCLY+KSTMGK YRVF
Sbjct: 192 LLKKNWQNVRCLYLKSTMGKVYRVF 216



>Os01g0860300 Ribosomal protein L1 family protein
          Length = 91

 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 84/91 (92%), Gaps = 3/91 (3%)

Query: 39  QGRQ---FPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMS 95
           QGRQ   FPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGN +MEEKQI QN+QMS
Sbjct: 1   QGRQAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMS 60

Query: 96  VNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 126
           VNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct: 61  VNFLVSLLKKNWQNVRCLYLKSTMGKVIRVF 91



>AK108883 
          Length = 216

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 74/85 (87%)

Query: 42  QFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVS 101
           +FP+ ++  +++E  VNETKA++KFQLKKVLCMGVAV N+ MEE QI+ NI  ++NFLVS
Sbjct: 132 KFPSPISGGKTVEDCVNETKASIKFQLKKVLCMGVAVANIDMEEAQIRTNIMYAINFLVS 191

Query: 102 LLKKNWQNVRCLYIKSTMGKPYRVF 126
           LLKKNWQNV+CLYIKS+MGKP+R++
Sbjct: 192 LLKKNWQNVKCLYIKSSMGKPFRLY 216



>AK119934 
          Length = 216

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 73/91 (80%), Gaps = 1/91 (1%)

Query: 36  WSKQGRQFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMS 95
            SK G+ FPT V+H E LE KV E K+T+KFQLKKVLC+GVAVG++ M + Q+  N+ ++
Sbjct: 127 LSKAGK-FPTPVSHNEDLEKKVTEVKSTIKFQLKKVLCLGVAVGHVQMTDDQLLANVMLA 185

Query: 96  VNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 126
           +NFL+SLLKK WQN++ L++KSTMGK YR+F
Sbjct: 186 INFLISLLKKQWQNIKSLHVKSTMGKVYRLF 216



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,552,276
Number of extensions: 100843
Number of successful extensions: 362
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 6
Length of query: 126
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 37
Effective length of database: 12,388,755
Effective search space: 458383935
Effective search space used: 458383935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)