Os08g0558000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L10a-3.
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Os08g0558000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L10a-3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.96 | 0.301 | 13.1 | 1.38 | 0.476 | -1.04 | 0.625 | -0.544 | 0.245 | 21.8 | 20.71 | 5860 | -- | -- |
| 41.11 | 0.299 | 13.2 | 1.33 | 0.462 | -0.903 | 0.634 | -- | 0.239 | 21.8 | 21.09 | 6437 | -- | -- |
| 42.35 | 0.303 | 13.1 | 1.35 | 0.469 | -0.98 | -- | -0.386 | 0.242 | 21.7 | 21 | 5874 | -- | -- |
| 42.58 | 0.304 | 13.2 | 1.27 | 0.454 | -0.952 | -- | -- | 0.221 | 21.8 | 21.1 | 5901 | -- | -- |
| 55.24 | 0.346 | 13.2 | 1.36 | -- | -0.938 | -- | -0.0702 | 0.222 | -- | 21.16 | 3831 | -- | -- |
| 59 | 0.36 | 13.1 | 1.94 | 0.482 | -- | 0.688 | -- | 0.529 | 21.9 | -- | -- | -- | -- |
| 60.83 | 0.365 | 13.1 | 1.91 | 0.48 | -- | -- | -- | 0.528 | 21.8 | -- | -- | -- | -- |
| 55.23 | 0.346 | 13.2 | 1.28 | -- | -0.988 | -- | -- | 0.212 | -- | 21.04 | 5208 | -- | -- |
| 45.97 | 0.316 | 13.2 | -- | 0.463 | -1.65 | -- | -- | -0.0908 | 21.7 | 18.63 | 47520 | -- | -- |
| 74.62 | 0.404 | 13.1 | 1.91 | -- | -- | -- | -- | 0.528 | -- | -- | -- | -- | -- |
| 156.95 | 0.586 | 13.1 | -- | 0.487 | -- | -- | -- | 0.315 | 22.1 | -- | -- | -- | -- |
| 58.62 | 0.357 | 13.2 | -- | -- | -1.65 | -- | -- | -0.112 | -- | 18.96 | 47520 | -- | -- |
| 171.33 | 0.611 | 13.1 | -- | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 13 |
| 18 | 40.42 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 27 | 40.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 28 | 40.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 41 | 40.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 81 | 40.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 3 |
| 82 | 40.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 4 |
| 85 | 40.68 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 245 | 41.06 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 252 | 41.08 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 262 | 41.11 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 271 | 41.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 322 | 41.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 347 | 41.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 363 | 41.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 369 | 41.28 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 410 | 41.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 437 | 41.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 439 | 41.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 470 | 41.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 477 | 41.42 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 500 | 41.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 542 | 41.49 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 579 | 41.51 | temperature | 20 | 14400 | < th | dose dependent | sin | 11 | NA |
| 596 | 41.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 599 | 41.52 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |