BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0558000 Os08g0558000|AK061522
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08360.1  | chr1:2636231-2637694 FORWARD LENGTH=217            160   2e-40
AT5G22440.1  | chr5:7435328-7436486 REVERSE LENGTH=218            160   2e-40
AT2G27530.1  | chr2:11763443-11764570 REVERSE LENGTH=217          158   6e-40

>AT1G08360.1 | chr1:2636231-2637694 FORWARD LENGTH=217
          Length = 216

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/85 (90%), Positives = 82/85 (96%)

Query: 42  QFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVS 101
           +FPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI QN+QMSVNFLVS
Sbjct: 132 KFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVS 191

Query: 102 LLKKNWQNVRCLYIKSTMGKPYRVF 126
           LLKKNWQNVRCLY+KSTMG P R+F
Sbjct: 192 LLKKNWQNVRCLYLKSTMGPPQRIF 216



>AT5G22440.1 | chr5:7435328-7436486 REVERSE LENGTH=218
          Length = 217

 Score =  160 bits (405), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/85 (91%), Positives = 82/85 (96%)

Query: 42  QFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVS 101
           +FPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI QN+QMSVNFLVS
Sbjct: 133 KFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVS 192

Query: 102 LLKKNWQNVRCLYIKSTMGKPYRVF 126
           LLKKNWQNVRCLY+KSTMG P RVF
Sbjct: 193 LLKKNWQNVRCLYLKSTMGPPNRVF 217



>AT2G27530.1 | chr2:11763443-11764570 REVERSE LENGTH=217
          Length = 216

 Score =  158 bits (400), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/85 (88%), Positives = 82/85 (96%)

Query: 42  QFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVS 101
           +FPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ+ QN+QMSVNFLVS
Sbjct: 132 KFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVS 191

Query: 102 LLKKNWQNVRCLYIKSTMGKPYRVF 126
           LLKKNWQNVRCLY+KSTMG P R+F
Sbjct: 192 LLKKNWQNVRCLYLKSTMGPPQRIF 216



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,329,292
Number of extensions: 71524
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 3
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)