FiT-DB / Search/ Help/ Sample detail

Os01g0860300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.67 (0.0265) R2 : 0.365
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.877 (0.0677) R2dC : 0.234 R2C : 0.207
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.523 (0.0557) R2dN8 : 0.158 R2N8 : 0.131
σ : 0.5
deviance : 114.04
__
_____
C
peak time of C : 16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.91 0.474 8.69 -0.277 0.784 0.573 1.16 0.436 -0.56 17.1 40.69 15 -- --
102.34 0.471 8.69 -0.269 0.783 0.575 1.19 -- -0.56 17.1 40.64 14 -- --
104.8 0.477 8.68 -0.273 0.799 0.509 -- 0.58 -0.552 16.7 40.72 15 -- --
105.52 0.478 8.69 -0.256 0.797 0.537 -- -- -0.562 16.7 41.16 14 -- --
137.6 0.546 8.68 -0.312 -- 0.696 -- 0.516 -0.575 -- 40.4 15 -- --
110.49 0.493 8.68 -0.254 0.869 -- 0.875 -- -0.555 16.3 -- -- -- --
112.45 0.497 8.68 -0.245 0.872 -- -- -- -0.55 16 -- -- -- --
138.12 0.547 8.68 -0.296 -- 0.714 -- -- -0.581 -- 41.16 14 -- --
107.3 0.482 8.68 -- 0.803 0.513 -- -- -0.524 16.6 41.33 15 -- --
153.87 0.58 8.68 -0.281 -- -- -- -- -0.573 -- -- -- -- --
114.04 0.5 8.67 -- 0.877 -- -- -- -0.523 16 -- -- -- --
138.87 0.549 8.68 -- -- 0.729 -- -- -0.589 -- 37.77 81 -- --
155.96 0.583 8.67 -- -- -- -- -- -0.542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.53 temperature 15.0 90 > th dose independent rect. 14 18
2 94.99 temperature 10.0 90 > th dose dependent rect. 8 6
6 95.30 temperature 10.0 270 > th dose dependent rect. 8 2
15 95.80 humidity 50.0 90 > th dose independent rect. 8 6
18 95.90 precipitation 0.1 90 < th dose independent rect. 8 6
19 95.90 precipitation 0.1 90 < th dose dependent rect. 8 6
22 96.06 radiation 40.0 10 < th dose independent rect. 12 20
23 96.07 atmosphere 995.0 90 > th dose independent rect. 14 18
24 96.08 radiation 40.0 90 < th dose independent rect. 13 19
26 96.10 temperature 10.0 90 > th dose independent rect. 8 6
27 96.10 atmosphere 995.0 90 > th dose independent rect. 8 6
28 96.10 atmosphere 1015.0 90 < th dose independent rect. 8 6
31 96.18 wind 1.0 30 > th dose independent rect. 8 6
32 96.19 wind 9.0 90 < th dose independent rect. 8 6
34 96.21 radiation 40.0 90 < th dose independent rect. 11 21
35 96.25 wind 9.0 90 < th dose independent rect. 14 18
36 96.28 temperature 10.0 43200 > th dose independent rect. 9 6
38 96.32 radiation 1.0 90 > th dose independent rect. 8 6
39 96.35 atmosphere 1010.0 90 < th dose independent rect. 14 18
40 96.35 temperature 15.0 270 > th dose independent rect. 10 22
43 96.42 humidity 50.0 90 > th dose independent rect. 14 18
52 96.53 precipitation 0.1 90 < th dose independent rect. 14 18
54 96.53 precipitation 0.1 90 < th dose dependent rect. 14 18
59 96.56 temperature 10.0 1440 > th dose independent rect. 9 6
62 96.56 temperature 10.0 1440 > th dose independent rect. 15 18
105 96.93 precipitation 0.1 10 < th dose independent rect. 14 18
107 96.93 precipitation 0.1 10 < th dose dependent rect. 14 18
136 97.13 humidity 50.0 270 > th dose independent rect. 9 1
164 97.26 radiation 40.0 10 < th dose independent rect. 4 15
169 97.28 wind 9.0 270 < th dose dependent rect. 8 2
170 97.29 temperature 10.0 270 > th dose independent rect. 9 1
171 97.29 atmosphere 995.0 270 > th dose independent rect. 9 1
172 97.29 atmosphere 1015.0 270 < th dose independent rect. 9 1
173 97.29 precipitation 0.1 270 < th dose independent rect. 9 1
178 97.29 precipitation 0.1 270 < th dose dependent rect. 9 1
189 97.33 wind 9.0 270 < th dose independent rect. 9 1
201 97.39 humidity 90.0 90 < th dose independent rect. 8 6
207 97.43 wind 1.0 270 > th dose independent rect. 9 1
212 97.46 temperature 10.0 270 > th dose dependent rect. 6 5
227 97.51 atmosphere 995.0 270 > th dose independent rect. 10 22
235 97.57 temperature 30.0 90 < th dose independent rect. 13 19
240 97.62 precipitation 0.1 270 < th dose independent rect. 10 22
241 97.62 precipitation 0.1 270 < th dose dependent rect. 10 22
244 97.64 temperature 15.0 270 > th dose independent rect. 11 19
245 97.64 radiation 1.0 270 > th dose dependent rect. 9 1
251 97.67 radiation 1.0 270 > th dose independent rect. 8 2
256 97.69 wind 9.0 90 < th dose dependent rect. 14 18
268 97.74 radiation 40.0 10 < th dose independent rect. 4 13
281 97.80 wind 1.0 14400 > th dose independent rect. 24 2
283 97.83 wind 9.0 270 < th dose independent rect. 10 22
284 97.85 radiation 30.0 90 < th dose independent sin 6 NA
326 98.11 humidity 90.0 270 < th dose independent rect. 9 1
336 98.14 atmosphere 995.0 1440 > th dose independent rect. 9 5
389 98.41 radiation 30.0 90 < th dose independent rect. 3 13
390 98.42 radiation 30.0 90 < th dose independent sin 9 NA
399 98.46 temperature 15.0 90 > th dose independent rect. 23 9
400 98.47 wind 1.0 14400 < th dose independent rect. 24 2
431 98.63 radiation 40.0 10 < th dose independent sin 4 NA
454 98.73 radiation 1.0 90 > th dose dependent rect. 8 6
457 98.76 wind 5.0 90 < th dose independent rect. 3 5
460 98.76 temperature 10.0 90 > th dose dependent rect. 8 15
466 98.79 wind 5.0 90 < th dose independent rect. 23 9
473 98.82 wind 1.0 14400 > th dose independent rect. 6 3
482 98.85 temperature 15.0 270 > th dose independent rect. 11 10
494 98.92 wind 1.0 90 > th dose independent rect. 14 18
499 98.94 wind 9.0 270 < th dose dependent rect. 7 4
528 99.04 atmosphere 995.0 270 > th dose independent rect. 11 19
541 99.08 wind 9.0 90 < th dose independent rect. 8 19
544 99.09 precipitation 0.1 90 < th dose independent rect. 3 5
550 99.09 precipitation 0.1 90 < th dose dependent rect. 3 5
561 99.11 humidity 50.0 270 > th dose independent rect. 6 7
568 99.13 atmosphere 995.0 90 > th dose dependent rect. 8 6
574 99.15 wind 1.0 270 > th dose independent rect. 10 22
585 99.17 atmosphere 1015.0 90 < th dose dependent rect. 3 5
587 99.18 temperature 10.0 90 > th dose independent rect. 3 5
589 99.18 temperature 30.0 90 < th dose independent rect. 3 5
590 99.18 humidity 50.0 90 > th dose independent rect. 3 5
592 99.18 humidity 50.0 270 > th dose independent rect. 6 5
593 99.18 atmosphere 995.0 90 > th dose independent rect. 3 5
594 99.18 atmosphere 1015.0 90 < th dose independent rect. 3 5
597 99.18 temperature 10.0 90 > th dose independent rect. 8 19
602 99.19 temperature 10.0 90 > th dose dependent rect. 8 18
613 99.23 radiation 40.0 90 < th dose dependent sin 4 NA
628 99.25 atmosphere 1015.0 270 < th dose independent rect. 10 22
630 99.26 radiation 40.0 90 < th dose independent rect. 3 5
656 99.31 precipitation 0.1 270 < th dose independent rect. 6 5
660 99.31 precipitation 0.1 270 < th dose dependent rect. 6 5
666 99.33 temperature 10.0 270 > th dose independent rect. 6 5
667 99.33 atmosphere 995.0 270 > th dose independent rect. 6 5
668 99.33 atmosphere 1015.0 270 < th dose independent rect. 6 5
671 99.34 wind 3.0 4320 > th dose independent rect. 8 1
679 99.36 wind 9.0 270 < th dose independent rect. 6 5
694 99.41 atmosphere 995.0 270 > th dose dependent rect. 8 2
711 99.44 wind 9.0 270 < th dose independent rect. 6 7
716 99.46 precipitation 0.1 270 < th dose independent rect. 6 7
719 99.46 precipitation 0.1 270 < th dose dependent rect. 6 7
725 99.47 precipitation 0.1 270 < th dose independent rect. 11 19
727 99.47 precipitation 0.1 270 < th dose dependent rect. 11 19
730 99.48 temperature 10.0 270 > th dose independent rect. 6 7
731 99.48 atmosphere 995.0 270 > th dose independent rect. 6 7
732 99.48 atmosphere 1015.0 270 < th dose independent rect. 6 7
749 99.52 radiation 1.0 10 > th dose dependent rect. 8 6
757 99.54 precipitation 0.1 90 < th dose independent rect. 8 19
758 99.54 precipitation 0.1 90 < th dose dependent rect. 8 19
772 99.56 temperature 10.0 43200 > th dose independent rect. 9 9
782 99.57 wind 9.0 270 < th dose independent rect. 11 19
803 99.61 precipitation 0.1 90 < th dose independent rect. 8 15
805 99.61 precipitation 0.1 90 < th dose dependent rect. 8 15
808 99.62 atmosphere 1010.0 90 < th dose independent rect. 23 9
827 99.68 atmosphere 1005.0 10 > th dose independent rect. 14 18
833 99.69 radiation 40.0 270 < th dose independent rect. 1 15
841 99.71 wind 1.0 14400 < th dose dependent rect. 6 3
867 99.77 wind 3.0 14400 < th dose dependent rect. 7 1
868 99.77 atmosphere 1015.0 10 < th dose dependent rect. 4 5
869 99.78 wind 3.0 4320 < th dose independent rect. 8 1
873 99.79 radiation 20.0 270 > th dose independent rect. 9 1
905 99.85 precipitation 0.1 90 < th dose independent rect. 23 9
906 99.85 humidity 50.0 270 > th dose independent rect. 21 14
909 99.85 precipitation 0.1 90 < th dose dependent rect. 23 9
913 99.87 radiation 30.0 90 < th dose independent rect. 3 10
917 99.88 temperature 10.0 90 > th dose dependent rect. 3 5
922 99.89 atmosphere 995.0 270 > th dose independent rect. 11 10
954 99.94 atmosphere 1015.0 270 < th dose independent rect. 11 10
955 99.94 wind 1.0 270 > th dose independent rect. 11 19
959 99.94 radiation 1.0 270 > th dose dependent rect. 17 18
961 99.95 wind 9.0 90 < th dose dependent rect. 3 5
963 99.96 temperature 30.0 90 < th dose independent rect. 23 9
964 99.96 humidity 50.0 90 > th dose independent rect. 23 9
966 99.96 atmosphere 995.0 90 > th dose independent rect. 23 9
967 99.96 temperature 10.0 90 > th dose independent rect. 8 15
998 100.01 humidity 70.0 90 > th dose independent sin 8 NA