Os08g0558800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L10a-3.
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Os08g0558800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L10a-3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.31 | 0.32 | 13.6 | 0.175 | 0.396 | 0.348 | 0.462 | -0.928 | -0.0701 | 17.8 | 19.8 | 2879 | -- | -- |
| 47.72 | 0.322 | 13.6 | 0.191 | 0.377 | 0.485 | 0.703 | -- | -0.0657 | 17.9 | 19.86 | 14284 | -- | -- |
| 46.74 | 0.318 | 13.6 | 0.177 | 0.401 | 0.353 | -- | -0.92 | -0.0714 | 17.6 | 19.8 | 2770 | -- | -- |
| 48.08 | 0.323 | 13.6 | 0.075 | 0.399 | 0.641 | -- | -- | -0.0992 | 17.6 | 19.1 | 14220 | -- | -- |
| 55.07 | 0.346 | 13.6 | 0.173 | -- | 0.349 | -- | -0.908 | -0.0761 | -- | 19.8 | 2880 | -- | -- |
| 52.55 | 0.34 | 13.5 | 0.597 | 0.379 | -- | 0.599 | -- | 0.0874 | 18 | -- | -- | -- | -- |
| 53.38 | 0.342 | 13.5 | 0.593 | 0.384 | -- | -- | -- | 0.0901 | 17.7 | -- | -- | -- | -- |
| 55.8 | 0.348 | 13.6 | 0.0334 | -- | 0.643 | -- | -- | -0.0967 | -- | 18.9 | 18343 | -- | -- |
| 48.09 | 0.323 | 13.6 | -- | 0.381 | 0.678 | -- | -- | -0.107 | 17.6 | 19.09 | 14206 | -- | -- |
| 61.02 | 0.365 | 13.5 | 0.581 | -- | -- | -- | -- | 0.0809 | -- | -- | -- | -- | -- |
| 62.66 | 0.37 | 13.5 | -- | 0.374 | -- | -- | -- | 0.024 | 17.7 | -- | -- | -- | -- |
| 55.77 | 0.348 | 13.6 | -- | -- | 0.665 | -- | -- | -0.12 | -- | 18.9 | 18347 | -- | -- |
| 69.93 | 0.39 | 13.5 | -- | -- | -- | -- | -- | 0.0165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.90 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 11 | 44.72 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 15 | 44.84 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 19 | 44.90 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 21 | 44.93 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 35 | 45.03 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 46 | 45.15 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 49 | 45.19 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 56 | 45.25 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 68 | 45.34 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 71 | 45.35 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 76 | 45.39 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 81 | 45.40 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 82 | 45.41 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 110 | 45.51 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 115 | 45.52 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 116 | 45.52 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 121 | 45.54 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 127 | 45.55 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 128 | 45.55 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 144 | 45.59 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 148 | 45.60 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 158 | 45.63 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 162 | 45.65 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 184 | 45.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 185 | 45.72 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 187 | 45.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 188 | 45.73 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 189 | 45.73 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 193 | 45.73 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 197 | 45.74 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 198 | 45.74 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 199 | 45.74 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 201 | 45.74 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 207 | 45.75 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 208 | 45.75 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 223 | 45.77 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 242 | 45.79 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 251 | 45.80 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 252 | 45.81 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 261 | 45.83 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 268 | 45.84 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 331 | 45.94 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 335 | 45.95 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 347 | 45.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 375 | 46.02 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 382 | 46.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 401 | 46.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 412 | 46.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 417 | 46.06 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 442 | 46.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 446 | 46.09 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 455 | 46.11 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 498 | 46.17 | temperature | 25.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 556 | 46.23 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 568 | 46.24 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 663 | 46.32 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 673 | 46.34 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 695 | 46.35 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 700 | 46.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 16 |
| 704 | 46.36 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 713 | 46.37 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 762 | 46.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 784 | 46.43 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 800 | 46.44 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 830 | 46.45 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 837 | 46.46 | humidity | 90.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 872 | 46.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 889 | 46.48 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 951 | 46.51 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 965 | 46.52 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 982 | 46.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 19 |