BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0548500 Os08g0548500|AK070951
(646 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0548500 Armadillo-like helical domain containing protein 572 e-163
Os09g0536200 Armadillo-like helical domain containing protein 460 e-129
Os03g0244700 Armadillo-like helical domain containing protein 310 2e-84
Os10g0147900 Armadillo-like helical domain containing protein 310 2e-84
>Os08g0548500 Armadillo-like helical domain containing protein
Length = 646
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/309 (90%), Positives = 279/309 (90%)
Query: 1 MDDLKAILARPIQLAEQVIKWAEEAQTCRQECLDLKAKVEXXXXXXXXXXXXXXYERPAR 60
MDDLKAILARPIQLAEQVIKWAEEAQTCRQECLDLKAKVE YERPAR
Sbjct: 1 MDDLKAILARPIQLAEQVIKWAEEAQTCRQECLDLKAKVERLASLLRQAARADLYERPAR 60
Query: 61 RIXXXXXXXXXXXXXXXXRCRGHGLIRRVFTIIPAGSFKKTSNQLDNSLGDLSWILRVSN 120
RI RCRGHGLIRRVFTIIPAGSFKKTSNQLDNSLGDLSWILRVSN
Sbjct: 61 RILDDTGKALDKAAALLDRCRGHGLIRRVFTIIPAGSFKKTSNQLDNSLGDLSWILRVSN 120
Query: 121 YSNADDLDDDHIGLPPIAQNEPILFLIWEQIAVLYTGNPEARADAAASIVSLARDNDRYG 180
YSNADDLDDDHIGLPPIAQNEPILFLIWEQIAVLYTGNPEARADAAASIVSLARDNDRYG
Sbjct: 121 YSNADDLDDDHIGLPPIAQNEPILFLIWEQIAVLYTGNPEARADAAASIVSLARDNDRYG 180
Query: 181 RLIIEEDGVPPLLRLIKEGSSEGQETAALAIGLLGRDPECVELMVLAGVCTAFAKILKDA 240
RLIIEEDGVPPLLRLIKEGSSEGQETAALAIGLLGRDPECVELMVLAGVCTAFAKILKDA
Sbjct: 181 RLIIEEDGVPPLLRLIKEGSSEGQETAALAIGLLGRDPECVELMVLAGVCTAFAKILKDA 240
Query: 241 PMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLLVSHLAFETVQEHSKYAVASKMSIHT 300
PMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLLVSHLAFETVQEHSKYAVASKMSIHT
Sbjct: 241 PMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLLVSHLAFETVQEHSKYAVASKMSIHT 300
Query: 301 VLMDKKNNG 309
VLMDKKNNG
Sbjct: 301 VLMDKKNNG 309
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/271 (95%), Positives = 259/271 (95%)
Query: 376 KQHNASLSGTSTKAREFEDPETXXXXXXXXXXXXWQLAMGNAAVCKNITESRALLCLSVL 435
KQHNASLSGTSTKAREFEDPET WQLAMGNAAVCKNITESRALLCLSVL
Sbjct: 376 KQHNASLSGTSTKAREFEDPETKAYLKANAAKALWQLAMGNAAVCKNITESRALLCLSVL 435
Query: 436 LEKGVDDVRYNSAMALMEICLVAEQNADLRRSAFKPTSPAARAVVDQLLRVVHKADYDEL 495
LEKGVDDVRYNSAMALMEICLVAEQNADLRRSAFKPTSPAARAVVDQLLRVVHKADYDEL
Sbjct: 436 LEKGVDDVRYNSAMALMEICLVAEQNADLRRSAFKPTSPAARAVVDQLLRVVHKADYDEL 495
Query: 496 LIPCIISLGCLSRTFRATETRIIGPLVNLLDEREADVSREAAAALTKFACTENYLHVDHS 555
LIPCIISLGCLSRTFRATETRIIGPLVNLLDEREADVSREAAAALTKFACTENYLHVDHS
Sbjct: 496 LIPCIISLGCLSRTFRATETRIIGPLVNLLDEREADVSREAAAALTKFACTENYLHVDHS 555
Query: 556 KAIIHHGGAKHLVQLVYFAEQAVQIAALLLVCYIAHNVPDNEELAQAEILTLLEWASKQA 615
KAIIHHGGAKHLVQLVYFAEQAVQIAALLLVCYIAHNVPDNEELAQAEILTLLEWASKQA
Sbjct: 556 KAIIHHGGAKHLVQLVYFAEQAVQIAALLLVCYIAHNVPDNEELAQAEILTLLEWASKQA 615
Query: 616 AMVQDPLIENLLLEAKIRMELYQSRGAKGYY 646
AMVQDPLIENLLLEAKIRMELYQSRGAKGYY
Sbjct: 616 AMVQDPLIENLLLEAKIRMELYQSRGAKGYY 646
>Os09g0536200 Armadillo-like helical domain containing protein
Length = 687
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/309 (74%), Positives = 252/309 (81%), Gaps = 1/309 (0%)
Query: 1 MDDLKAILARPIQLAEQVIKWAEEAQTCRQECLDLKAKVEXXXXXXXXXXXXXXYERPAR 60
MDDLK ILARPIQLAEQVIKW++EA T RQEC++LKAKVE YERPAR
Sbjct: 1 MDDLKQILARPIQLAEQVIKWSDEAYTFRQECMELKAKVERLAGQLRQAARADLYERPAR 60
Query: 61 RIXXXXXXXXXXXXXXXXRCRGHGLIRRVFTIIPAGSFKKTSNQLDNSLGDLSWILRVSN 120
RI +CR HG++RRVFTIIPAGSFKK +NQLDNS+GDLSW+LRVS+
Sbjct: 61 RIFDDTEKALDKAMALVDKCRAHGVVRRVFTIIPAGSFKKMANQLDNSIGDLSWLLRVSS 120
Query: 121 YSNADDLDDDHIGLPPIAQNEPILFLIWEQIAVLYTGNPEARADAAASIVSLARDNDRYG 180
++ DD D HIGLPPIAQNEPILFLIWEQIAVLYTGN +ARADAAAS+VSLARDNDRY
Sbjct: 121 SASDDDDFDAHIGLPPIAQNEPILFLIWEQIAVLYTGNLDARADAAASLVSLARDNDRYS 180
Query: 181 RLIIEEDGVPPLLRLIKEGSSEGQETAALAIGLLGRDPECVELMVLAGVCTAFAKILKDA 240
+LIIEEDGVPPLLRL+KEG EGQE AALAIGLLGRDPECVE MV AG CTAFAK+LK+
Sbjct: 181 KLIIEEDGVPPLLRLVKEGKLEGQENAALAIGLLGRDPECVEQMVHAGACTAFAKVLKEG 240
Query: 241 PMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLLVSHLAFETVQEHSKYAV-ASKMSIH 299
PMKVQ VAWAVSELA NHPKCQDAF NVIRLLV HLAFETVQEHSKYAV +SKMSIH
Sbjct: 241 PMKVQATVAWAVSELAANHPKCQDAFASHNVIRLLVGHLAFETVQEHSKYAVTSSKMSIH 300
Query: 300 TVLMDKKNN 308
+V+MDKKN+
Sbjct: 301 SVVMDKKNS 309
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/270 (80%), Positives = 236/270 (87%)
Query: 376 KQHNASLSGTSTKAREFEDPETXXXXXXXXXXXXWQLAMGNAAVCKNITESRALLCLSVL 435
KQHN SLSG +T+ REFEDPET W LA GNAA+CK+ITESRALLC +VL
Sbjct: 369 KQHNVSLSGATTRGREFEDPETKASMKANAAKALWHLAKGNAAICKSITESRALLCFAVL 428
Query: 436 LEKGVDDVRYNSAMALMEICLVAEQNADLRRSAFKPTSPAARAVVDQLLRVVHKADYDEL 495
LEKG DV+YNSAMALMEIC VAEQN+DLRRSAFKPTSPAARAVVDQLLRVV KA+YD+L
Sbjct: 429 LEKGEGDVQYNSAMALMEICSVAEQNSDLRRSAFKPTSPAARAVVDQLLRVVDKAEYDDL 488
Query: 496 LIPCIISLGCLSRTFRATETRIIGPLVNLLDEREADVSREAAAALTKFACTENYLHVDHS 555
LIPCIISLGCLSRTFRATETRIIGPLV LLDEREADVSREAA +LTKFACTENYL VDHS
Sbjct: 489 LIPCIISLGCLSRTFRATETRIIGPLVKLLDEREADVSREAALSLTKFACTENYLRVDHS 548
Query: 556 KAIIHHGGAKHLVQLVYFAEQAVQIAALLLVCYIAHNVPDNEELAQAEILTLLEWASKQA 615
KAII GGAKHLVQLVYF+EQ VQ+AAL LVCYIAHNVPD+EELAQAEILT+LEWASKQ+
Sbjct: 549 KAIISAGGAKHLVQLVYFSEQVVQLAALALVCYIAHNVPDSEELAQAEILTVLEWASKQS 608
Query: 616 AMVQDPLIENLLLEAKIRMELYQSRGAKGY 645
M+QDPLIE+LL EAKIR+ELYQSR + Y
Sbjct: 609 FMMQDPLIESLLPEAKIRLELYQSRDSAVY 638
>Os03g0244700 Armadillo-like helical domain containing protein
Length = 646
Score = 310 bits (795), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/272 (59%), Positives = 204/272 (75%), Gaps = 6/272 (2%)
Query: 377 QHNASLSGTSTK-AREFEDPETXXXXXXXXXXXXWQLAMGNAAVCKNITESRALLCLSVL 435
+H + +G+S + +RE EDP T W+LA G+ VCK+ITESRALLC + L
Sbjct: 376 RHQLTPNGSSGRGSREAEDPATKAHMKAMAAKALWKLARGHVGVCKSITESRALLCFAKL 435
Query: 436 LEKG----VDDVRYNSAMALMEICLVAEQNADLRRSAFKPTSPAARAVVDQLLRVVHKAD 491
LE+G D+++ SAMA+MEI VAE N LR+SAFKP+SPAA+AVV+QLLR+V K D
Sbjct: 436 LEQGDGGAGTDLQFYSAMAIMEITRVAEHNLALRQSAFKPSSPAAKAVVEQLLRIVCKGD 495
Query: 492 YDELLIPCIISLGCLSRTFRATETRIIGPLVNLLDEREADVSREAAAALTKFACTENYLH 551
D+LL PCI SLGCLSRTF A+ETR++ PLV LLDERE V++EA ALTKFACTEN+LH
Sbjct: 496 VDDLLRPCITSLGCLSRTFTASETRVVRPLVELLDERELPVTKEAVVALTKFACTENHLH 555
Query: 552 VDHSKAIIHHGGAKHLVQLVYFAEQAVQIAALLLVCYIAHNVPDNEELAQAEILTLLEWA 611
V H KAI+ GGA+HLVQLVY +Q VQI AL+L+CYIA +VP+NEELAQA +L +L WA
Sbjct: 556 VSHCKAIVDGGGARHLVQLVYLGDQ-VQIEALILLCYIALHVPENEELAQAGVLAVLLWA 614
Query: 612 SKQAAMVQDPLIENLLLEAKIRMELYQSRGAK 643
SKQ MVQD ++ LL +AK R+EL+QSR ++
Sbjct: 615 SKQPHMVQDLRVDALLPDAKGRLELFQSRASR 646
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/317 (47%), Positives = 199/317 (62%), Gaps = 14/317 (4%)
Query: 2 DDLKAILARPIQLAEQVIKWAEEAQTCRQECLDLKAKVEXXXXXXXXXXXXXXYERPARR 61
+ +KA+LA+PIQLA+QV K A Q R EC+DL+++ E YERPA R
Sbjct: 3 EGVKAMLAKPIQLADQVAKQAGW-QCFRAECMDLRSRAEKLAALLRQAARAELYERPAAR 61
Query: 62 IXXXXXXXXXXXXXXXXRC-RGHGLIRRVFTIIPAGSFKKTSNQLDNSLGDLSWILRVSN 120
I RC + H +RR FT+ P +T LD +L D++W+LR+S+
Sbjct: 62 IMADTVRALNKAAGMAARCFQSHSRLRRFFTLNPVSGLPRTLAMLDTALEDVAWLLRISS 121
Query: 121 -----YSNADDLDDDHIGLPPIAQNEPILFLIWEQIAVLYTGNPEARADAAASIVSLARD 175
DD D D GLP IAQNEPILFLIW+ IA L+TGN ARADAA ++ SLARD
Sbjct: 122 PHADAGGGGDDDDYDLHGLPNIAQNEPILFLIWDHIARLHTGNLAARADAAHNLASLARD 181
Query: 176 NDRYGRLIIEEDGVPPLLRLIKEGSSEGQETAALAIGLLGRDPECVELMVLAGVCTAFAK 235
N + +LIIEEDGV PL++L+K+G+ +GQE AA A+GLL RD E V+ ++LAGVC+ FA
Sbjct: 182 NPHFAKLIIEEDGVAPLVKLLKDGTDDGQEAAATALGLLARDEESVDKLLLAGVCSVFAA 241
Query: 236 ILKDAPMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLLVSHLAFETVQEHSKYAVA-- 293
LK PM+VQ VA +V+ LA ++ KCQD Q+N +R LV HLA T+QEHS+Y VA
Sbjct: 242 ALKVPPMRVQAAVAESVAALAHHNQKCQDLLAQTNAVRHLVGHLAAGTIQEHSRYYVAWT 301
Query: 294 -----SKMSIHTVLMDK 305
+ S+H+V++ K
Sbjct: 302 GSRNMNMTSLHSVVLAK 318
>Os10g0147900 Armadillo-like helical domain containing protein
Length = 660
Score = 310 bits (794), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/267 (59%), Positives = 201/267 (75%), Gaps = 7/267 (2%)
Query: 383 SGTSTKA--REFEDPETXXXXXXXXXXXXWQLAMGNAAVCKNITESRALLCLSVLLEKG- 439
SG+S + RE EDPET W+LA G+ VCK+IT+SRALLC +VLLEKG
Sbjct: 395 SGSSGRGAVREVEDPETKARLKAMAARALWKLARGHLGVCKSITDSRALLCFAVLLEKGD 454
Query: 440 ---VDDVRYNSAMALMEICLVAEQNADLRRSAFKPTSPAARAVVDQLLRVVHKADYDELL 496
V+Y SAMA+MEI VAE + LR+SAFKP+SPAA+AVVDQLL +V K DYD+LL
Sbjct: 455 GGMGTSVQYFSAMAIMEISRVAEHSLALRQSAFKPSSPAAKAVVDQLLHIVSKGDYDDLL 514
Query: 497 IPCIISLGCLSRTFRATETRIIGPLVNLLDEREADVSREAAAALTKFACTENYLHVDHSK 556
+PCI +LGCL+RTF A+E R+I PLV LLDERE V +EA ALTKFAC EN+LHV+H K
Sbjct: 515 LPCITALGCLARTFTASENRVIAPLVELLDEREPPVIKEAVLALTKFACNENHLHVNHCK 574
Query: 557 AIIHHGGAKHLVQLVYFAEQAVQIAALLLVCYIAHNVPDNEELAQAEILTLLEWASKQAA 616
AI+ GGA+HLVQLVY ++ VQI AL+L+C+IA +VP++EELAQA +L +L WASKQA
Sbjct: 575 AIVDSGGARHLVQLVYLGDE-VQIEALILLCFIALHVPESEELAQAGVLAVLLWASKQAH 633
Query: 617 MVQDPLIENLLLEAKIRMELYQSRGAK 643
M+QD ++ LL +AK R+EL+QSR ++
Sbjct: 634 MIQDMRVDALLPDAKGRLELFQSRASR 660
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/301 (45%), Positives = 182/301 (60%), Gaps = 15/301 (4%)
Query: 2 DDLKAILARPIQLAEQVIKWAEEAQTCRQECLDLKAKVEXXXXXXXXXXXXXXYERPARR 61
+ +KA+LARPIQLA++V K A+ R EC +LKA+ + Y+RPA R
Sbjct: 3 EGVKAMLARPIQLADEVAKQCGAARCFRAECGELKARADKLAALLRQAARADLYDRPAAR 62
Query: 62 IXXXXXXXXXXXXXXXXRC-RGHGLIRRVFTIIPAGSFKKTSNQLDNSLGDLSWILRVSN 120
I RC GH +RR+FT+ PA F +T LD +L D++W+LR+S+
Sbjct: 63 IMAGAQQALLKASSLAARCASGHPRLRRLFTLSPAAGFPRTVALLDTALEDVAWLLRISS 122
Query: 121 YSNADDLDDDHI--------------GLPPIAQNEPILFLIWEQIAVLYTGNPEARADAA 166
+ GLP IAQNEPILFLIW+ +A L+TG ARAD+A
Sbjct: 123 PRSGGGGGGGGGGGDDDGDGDDGDLRGLPNIAQNEPILFLIWDHVARLHTGGLAARADSA 182
Query: 167 ASIVSLARDNDRYGRLIIEEDGVPPLLRLIKEGSSEGQETAALAIGLLGRDPECVELMVL 226
A++ SLARD+ + +LIIEEDGVPPLLRL+KEG+ +GQE AA A+GLLG D E ++ +V
Sbjct: 183 ANLASLARDSQHFAKLIIEEDGVPPLLRLLKEGTDDGQEAAARALGLLGCDDESIDKLVQ 242
Query: 227 AGVCTAFAKILKDAPMKVQGMVAWAVSELATNHPKCQDAFLQSNVIRLLVSHLAFETVQE 286
AGVC+ FA LKD PM+VQ VA A+ LA CQ+ F Q+N +R LV HLA T+QE
Sbjct: 243 AGVCSVFAAALKDPPMRVQAAVADAIGTLADRSATCQELFAQNNAVRYLVGHLASGTIQE 302
Query: 287 H 287
H
Sbjct: 303 H 303
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,101,704
Number of extensions: 612918
Number of successful extensions: 1607
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1597
Number of HSP's successfully gapped: 8
Length of query: 646
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 539
Effective length of database: 11,448,903
Effective search space: 6170958717
Effective search space used: 6170958717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)