BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0510500 Os08g0510500|AK070907
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0510500 ENT domain containing protein 498 e-141
Os04g0659400 ENT domain containing protein 125 4e-29
Os08g0328300 ENT domain containing protein 121 5e-28
Os09g0279000 ENT domain containing protein 83 2e-16
>Os08g0510500 ENT domain containing protein
Length = 272
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/272 (91%), Positives = 248/272 (91%)
Query: 1 MQYQPLDSSGTDDDLPPTYQPRGPRVIFNGNGSLPQPNLHSNVDREIRQIEQQAYTGVLR 60
MQYQPLDSSGTDDDLPPTYQPRGPRVIFNGNGSLPQPNLHSNVDREIRQIEQQAYTGVLR
Sbjct: 1 MQYQPLDSSGTDDDLPPTYQPRGPRVIFNGNGSLPQPNLHSNVDREIRQIEQQAYTGVLR 60
Query: 61 AFKVQSDAITWEKESLITELRKELQISDKEHRVLLKGVTEEEAVCRIXXXXXXXXXXXXX 120
AFKVQSDAITWEKESLITELRKELQISDKEHRVLLKGVTEEEAVCRI
Sbjct: 61 AFKVQSDAITWEKESLITELRKELQISDKEHRVLLKGVTEEEAVCRIRQSRQTGGTQSSS 120
Query: 121 XXXXXXXXXXXAKRQKKSHSVPVTPQAPVITMHAVVGKKGGRQASDRVLKRLPSNNSPML 180
AKRQKKSHSVPVTPQAPVITMHAVVGKKGGRQASDRVLKRLPSNNSPML
Sbjct: 121 HHSSVVHTPVPAKRQKKSHSVPVTPQAPVITMHAVVGKKGGRQASDRVLKRLPSNNSPML 180
Query: 181 GSSRRRGRLHPNELIKGYSPLDGFGIPNTGNVVMEVEKVLSNPNMLEIEKAMKLLRDQEQ 240
GSSRRRGRLHPNELIKGYSPLDGFGIPNTGNVVMEVEKVLSNPNMLEIEKAMKLLRDQEQ
Sbjct: 181 GSSRRRGRLHPNELIKGYSPLDGFGIPNTGNVVMEVEKVLSNPNMLEIEKAMKLLRDQEQ 240
Query: 241 SLLDAIARLDEASDGENEDIVLVASQLGTTVA 272
SLLDAIARLDEASDGENEDIVLVASQLGTTVA
Sbjct: 241 SLLDAIARLDEASDGENEDIVLVASQLGTTVA 272
>Os04g0659400 ENT domain containing protein
Length = 400
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 85/114 (74%), Gaps = 8/114 (7%)
Query: 1 MQYQ-PLDSSGTDDDLPPTYQPRGPRV-IFNGNGS---LPQPNL--HSNVDREIRQIEQQ 53
M Y P DSSGTDDDLPPT Q RG RV F+ NG +P + H +++ EI Q+EQ+
Sbjct: 4 MGYNNPYDSSGTDDDLPPT-QNRGLRVRSFSANGRASVMPFSYIRPHGDLESEIHQVEQE 62
Query: 54 AYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLLKGVTEEEAVCRI 107
AYTGVLRAFKVQSDAI+WEKESLITELRKEL++SD EHR LL V E+ A+ R+
Sbjct: 63 AYTGVLRAFKVQSDAISWEKESLITELRKELRVSDDEHRELLNKVNEDVAIRRM 116
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 71/104 (68%), Gaps = 8/104 (7%)
Query: 169 LKRLPSNNSPMLGSSRRRGRLHPNELIKGYSP--------LDGFGIPNTGNVVMEVEKVL 220
++R P NN M +SR GR NE K +P + +PNT +VV+EVE+VL
Sbjct: 281 MRRHPGNNGTMAMASRGGGRFSRNEPTKDSAPPQNGINRNIGHIDVPNTRSVVIEVERVL 340
Query: 221 SNPNMLEIEKAMKLLRDQEQSLLDAIARLDEASDGENEDIVLVA 264
SNPNM EIEKA KLL+DQEQSLLDAIARLD+ASD E+ED+ + A
Sbjct: 341 SNPNMGEIEKAKKLLQDQEQSLLDAIARLDDASDSESEDMAVGA 384
>Os08g0328300 ENT domain containing protein
Length = 458
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 78/116 (67%), Gaps = 9/116 (7%)
Query: 1 MQYQPLDSSGTDDDLPPTYQPRGPRVI--FNGNG-----SLPQPNLHSNVDRE--IRQIE 51
M Y P+DSSGTDDDLPPTYQ RG R +GNG ++P D E I Q+E
Sbjct: 1 MDYNPVDSSGTDDDLPPTYQNRGVRGSGRVSGNGRDIVSAVPYNRTKPQTDMETQIHQLE 60
Query: 52 QQAYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLLKGVTEEEAVCRI 107
Q AY VLRAFK QSDAI+WEKE LITELRKEL++SDKEHR LL V ++ + RI
Sbjct: 61 QDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRI 116
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 11/110 (10%)
Query: 161 GRQASDRVLKRLPSNNSPMLGSSR---------RRGRLHPNELIKGYSPLDGFGIPNTGN 211
GR A+ K+ S N PM G R R P++ G D I +T +
Sbjct: 313 GRGATVHGGKKSSSRNGPMSGPGRGSRGPQKNTSRKEFPPSQNGVGKKSSDCIEILHTES 372
Query: 212 VVMEVEKVLS--NPNMLEIEKAMKLLRDQEQSLLDAIARLDEASDGENED 259
++ EVE+V S NP+ LE+EKA K+L++ EQSL+DAIARL EASDGE+E+
Sbjct: 373 LIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGESEE 422
>Os09g0279000 ENT domain containing protein
Length = 409
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 46 EIRQIEQQAYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLLKGVTEEEAVC 105
+I +EQ+AY VLRAFK QSDAITWEKE LITELRKEL++SD +HR LL V ++ +
Sbjct: 4 QIHHLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRVSDVDHRELLNRVNSDDIIR 63
Query: 106 RIXXXXXXXXXXXXXXXXXX-------XXXXXXAKRQKKSHSVPVTPQAPVITMHA 154
I KRQK S S P P AP MH+
Sbjct: 64 SIREWRSAGGPQAMLPNNAQPMHDLAPSPTTSGRKRQKTSQSFPALP-APPPVMHS 118
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 48/60 (80%), Gaps = 2/60 (3%)
Query: 202 DGFGIPNTGNVVMEVEKVLS--NPNMLEIEKAMKLLRDQEQSLLDAIARLDEASDGENED 259
D I +T +++ EVE+V S NP+ LE+EKA K+L++QEQSL+DAIARL EASDGE+++
Sbjct: 313 DDIDILHTESLIKEVERVFSINNPDPLEVEKAKKVLKEQEQSLIDAIARLAEASDGESDE 372
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,883,156
Number of extensions: 368096
Number of successful extensions: 993
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 7
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)