Os08g0510500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ENT domain containing protein.
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Os08g0510500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ENT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.24 | 0.241 | 10.8 | 0.962 | 0.658 | 0.352 | 0.236 | 0.513 | 0.387 | 5.27 | 30.33 | 117 | -- | -- |
| 26.91 | 0.242 | 10.8 | 0.96 | 0.662 | 0.356 | 0.302 | -- | 0.385 | 5.22 | 30.34 | 119 | -- | -- |
| 26.36 | 0.239 | 10.8 | 0.964 | 0.659 | 0.347 | -- | 0.558 | 0.385 | 5.21 | 30.35 | 119 | -- | -- |
| 27.14 | 0.243 | 10.8 | 0.952 | 0.656 | 0.352 | -- | -- | 0.389 | 5.19 | 30.33 | 127 | -- | -- |
| 34.13 | 0.272 | 10.8 | 0.99 | -- | 0.779 | -- | 0.179 | 0.428 | -- | 17.79 | 488 | -- | -- |
| 29.93 | 0.256 | 10.8 | 0.934 | 0.746 | -- | 0.291 | -- | 0.363 | 4.53 | -- | -- | -- | -- |
| 30.16 | 0.257 | 10.8 | 0.931 | 0.748 | -- | -- | -- | 0.361 | 4.51 | -- | -- | -- | -- |
| 29.39 | 0.253 | 10.8 | 0.931 | -- | 0.829 | -- | -- | 0.394 | -- | 3.37 | 568 | -- | -- |
| 50.12 | 0.33 | 10.8 | -- | 0.673 | 0.447 | -- | -- | 0.283 | 4.98 | 39.8 | 157 | -- | -- |
| 60.06 | 0.362 | 10.8 | 0.961 | -- | -- | -- | -- | 0.381 | -- | -- | -- | -- | -- |
| 53.03 | 0.341 | 10.8 | -- | 0.766 | -- | -- | -- | 0.258 | 4.48 | -- | -- | -- | -- |
| 51.78 | 0.335 | 10.8 | -- | -- | 0.879 | -- | -- | 0.389 | -- | 9.285 | 539 | -- | -- |
| 84.39 | 0.429 | 10.9 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.52 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 2 | 24.77 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 4 | 24.87 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 7 | 24.95 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 11 |
| 14 | 25.03 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 9 |
| 20 | 25.07 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 7 |
| 48 | 25.33 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 65 | 25.37 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 71 | 25.38 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 74 | 25.41 | atmosphere | 1000 | 10 | < th | dose independent | sin | 22 | NA |
| 77 | 25.43 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 92 | 25.44 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 13 |
| 110 | 25.49 | atmosphere | 1000 | 30 | > th | dose independent | sin | 22 | NA |
| 122 | 25.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 133 | 25.56 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 9 |
| 141 | 25.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 159 | 25.62 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 3 | 15 |
| 161 | 25.62 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 191 | 25.71 | temperature | 30 | 90 | > th | dose independent | sin | 6 | NA |
| 216 | 25.75 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 239 | 25.78 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 6 | 7 |
| 249 | 25.82 | radiation | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 251 | 25.82 | atmosphere | 1005 | 270 | < th | dose dependent | sin | 0 | NA |
| 265 | 25.85 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 16 |
| 272 | 25.87 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 21 | NA |
| 289 | 25.90 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 300 | 25.92 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 17 |
| 310 | 25.93 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 337 | 25.96 | radiation | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 347 | 25.98 | radiation | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 356 | 25.98 | radiation | 10 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 365 | 25.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 372 | 26.00 | radiation | 20 | 90 | > th | dose dependent | sin | 5 | NA |
| 403 | 26.04 | radiation | 30 | 90 | < th | dose independent | sin | 4 | NA |
| 456 | 26.08 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 13 |
| 462 | 26.09 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 463 | 26.09 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 3 |
| 486 | 26.10 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 495 | 26.11 | atmosphere | 1005 | 720 | < th | dose dependent | sin | 3 | NA |
| 499 | 26.12 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |
| 543 | 26.15 | radiation | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 550 | 26.16 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 568 | 26.17 | radiation | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 573 | 26.18 | radiation | 30 | 10 | < th | dose independent | sin | 4 | NA |
| 593 | 26.19 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 1 |
| 618 | 26.21 | radiation | 40 | 90 | < th | dose dependent | sin | 2 | NA |
| 629 | 26.22 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 638 | 26.23 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 643 | 26.23 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 645 | 26.24 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 662 | 26.25 | radiation | 40 | 270 | < th | dose dependent | sin | 9 | NA |
| 663 | 26.25 | radiation | 40 | 10 | < th | dose dependent | sin | 1 | NA |
| 673 | 26.26 | radiation | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 676 | 26.26 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 9 | 1 |
| 708 | 26.29 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 11 |
| 712 | 26.29 | radiation | 20 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 713 | 26.29 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 750 | 26.30 | radiation | 20 | 90 | > th | dose dependent | no | NA | NA |
| 839 | 26.30 | radiation | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 848 | 26.31 | radiation | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 995 | 26.35 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 14 |