Os09g0279000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ENT domain containing protein.
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Os09g0279000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ENT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.25 | 0.211 | 11.6 | -0.635 | 0.419 | 0.431 | 0.0387 | -0.178 | -0.0167 | 3.47 | 21.2 | 1329 | -- | -- |
| 20.32 | 0.21 | 11.6 | -0.593 | 0.422 | 0.446 | 0.0403 | -- | -0.0111 | 3.43 | 21.2 | 1336 | -- | -- |
| 20.25 | 0.21 | 11.6 | -0.635 | 0.419 | 0.43 | -- | -0.176 | -0.0164 | 3.5 | 21.23 | 1326 | -- | -- |
| 20.32 | 0.21 | 11.6 | -0.593 | 0.42 | 0.446 | -- | -- | -0.00773 | 3.5 | 21.25 | 1328 | -- | -- |
| 29.64 | 0.254 | 11.6 | -0.621 | -- | 0.464 | -- | -0.167 | -0.018 | -- | 21.33 | 1138 | -- | -- |
| 25.82 | 0.238 | 11.6 | -0.408 | 0.443 | -- | -0.0323 | -- | 0.113 | 3.41 | -- | -- | -- | -- |
| 25.82 | 0.238 | 11.6 | -0.407 | 0.443 | -- | -- | -- | 0.114 | 3.39 | -- | -- | -- | -- |
| 29.71 | 0.254 | 11.6 | -0.578 | -- | 0.474 | -- | -- | -0.00848 | -- | 21.4 | 1133 | -- | -- |
| 27.81 | 0.246 | 11.6 | -- | 0.412 | 0.249 | -- | -- | 0.075 | 3.12 | 22.3 | 1275 | -- | -- |
| 36.85 | 0.284 | 11.6 | -0.388 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 30.19 | 0.257 | 11.6 | -- | 0.435 | -- | -- | -- | 0.159 | 3.4 | -- | -- | -- | -- |
| 36.83 | 0.283 | 11.6 | -- | -- | 0.295 | -- | -- | 0.0723 | -- | 22.4 | 1063 | -- | -- |
| 40.82 | 0.298 | 11.6 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 2 | 20.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 4 | 20.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 5 | 20.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 6 | 20.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 7 | 20.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 51 | 20.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 59 | 20.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 66 | 20.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 109 | 20.23 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 156 | 20.27 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 253 | 20.34 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 271 | 20.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 440 | 20.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 442 | 20.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 471 | 20.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 589 | 20.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 696 | 20.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 726 | 20.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 728 | 20.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 748 | 20.64 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 885 | 20.72 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 891 | 20.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 999 | 20.78 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |