BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0279000 Os09g0279000|AK068285
(409 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13020.1 | chr5:4129691-4132089 REVERSE LENGTH=398 286 2e-77
AT2G44440.1 | chr2:18336621-18338950 REVERSE LENGTH=430 248 3e-66
AT3G12140.3 | chr3:3869121-3870964 REVERSE LENGTH=384 238 6e-63
AT5G06780.1 | chr5:2094147-2096377 REVERSE LENGTH=321 136 2e-32
>AT5G13020.1 | chr5:4129691-4132089 REVERSE LENGTH=398
Length = 397
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 167/374 (44%), Positives = 213/374 (56%), Gaps = 33/374 (8%)
Query: 1 MATQIHHLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRVSDVDHRELLNRVNSDD 60
M TQIH +EQEAY S+LRAFKAQSDAITWEKE LITELRKELRVSD +HRELL+RVN+D+
Sbjct: 50 METQIHLIEQEAYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADE 109
Query: 61 IIRSIREWRSAGGPQAMLPNNAQPMHDLAPSPTTSG-RKRQKTSQSFPALPA--PPPVMH 117
+IR IREWR A Q+ +P Q +HD APSP SG RK+QKTSQS +L P P +H
Sbjct: 110 MIRRIREWRKANSLQSSVP---QLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLH 165
Query: 118 -SQQLALQGXXXXXXXXXXXXXXXXXXXXXXXQKVPGGPSVKAMTSSAGPSGRGPHMNRN 176
S Q + + G P A+T+
Sbjct: 166 PSMQPSSSALRRGGPPPGPKTKKPKTSMQYPSTGIAGRPQAGALTN-------------- 211
Query: 177 FPVGLVSFEPSEALHINPLINRKVMSRWPEDNSFYEATITDYNPETDLYALAYDINTANE 236
EP E+ +PL+ RKV ++WP+DN +YEA ITDYNP +AL YDIN+ANE
Sbjct: 212 --------EPGESGSYDPLVGRKVWTKWPDDNQYYEAVITDYNPVEGRHALVYDINSANE 263
Query: 237 SWEWVDLKQMGPEDIRWQGDDPGIYQGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVS 296
+WEWV+LK++ P DIRW+G+DPGI +
Sbjct: 264 TWEWVNLKEISPGDIRWEGEDPGISR---KGGHPGQGRGTKTMARGGPASNAGGRGRGSM 320
Query: 297 RKDFPPSQNGVGKRSSDDIDILHTESLIKEVERVFSINNPDPXXXXXXXXXXXXXXXSLI 356
R P +QNG+GK++ +I+ILHTE+L+KEVE+VF NP+P +L+
Sbjct: 321 RMQQPKTQNGIGKKALGEIEILHTETLLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALM 380
Query: 357 DAIARLAEASDGES 370
DAIA+L E SDGES
Sbjct: 381 DAIAKLEEISDGES 394
>AT2G44440.1 | chr2:18336621-18338950 REVERSE LENGTH=430
Length = 429
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 196/378 (51%), Gaps = 17/378 (4%)
Query: 1 MATQIHHLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRVSDVDHRELLNRVNSDD 60
M QIH +E+EAY SVLRAFKAQ DAI+WEKE +ITELRKEL +S+ +HRELL RVNSDD
Sbjct: 57 MEAQIHQIEKEAYISVLRAFKAQGDAISWEKESVITELRKELSLSNEEHRELLGRVNSDD 116
Query: 61 IIRSIREWRSAGGPQAMLPNNAQPMHDLAPSPTTSGR-KRQKTSQSFPALP--APPPVMH 117
IR IREWR +GG Q + N AQ +HD PSP+ S K K +Q P+ P + P H
Sbjct: 117 TIRRIREWRQSGGMQPSMRNAAQVVHDTLPSPSVSASMKTHKPNQPIPSQPFASSSPSFH 176
Query: 118 SQQLALQGXXXXXXXXXXXXXXXXXXXXXXXQKVPGGPSVK-AMTSSAGPSGRGPHMNRN 176
Q PG S K A + RG MNR
Sbjct: 177 PQADPTHPFASSTAKRGPVPIVKGKKHKPV---FPGSSSTKHAPYHPSDQPPRGQVMNRL 233
Query: 177 FPVGLVSFEPSEALHINPLINRKVMSRWPEDNSFYEATITDYNPETDLYALAYDINTANE 236
V S EP+ + + R+V ++WPEDN+FY+A IT YNP +AL YDI T +E
Sbjct: 234 PSVPASSSEPTNGIDPESFLGRRVRTKWPEDNTFYDAIITQYNPVEGRHALVYDIATPSE 293
Query: 237 SWEWVDLKQMGPEDIRWQGDDPGI---YQGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293
+WEWV L ++ P DI W G+DPG+ Y G
Sbjct: 294 TWEWVRLSEISPGDIEWIGEDPGLGNRYNG-------QGHGLNRTTGPNCVPQRGSGLEK 346
Query: 294 HVSRKDFPPSQNGVGKRSSDDIDILHTESLIKEVERVFSINNPDPXXXXXXXXXXXXXXX 353
+ RK F SQNG GK+ DI I T+ LI+EVERV +NPDP
Sbjct: 347 NTIRKGFRTSQNGTGKKKHLDIRIRQTDVLIREVERVLRSHNPDPYEVERAKRVLEEHEH 406
Query: 354 SLIDAIARLAEASDGESD 371
+L+ AIA+L + SDGE++
Sbjct: 407 ALVGAIAKLGDISDGENE 424
>AT3G12140.3 | chr3:3869121-3870964 REVERSE LENGTH=384
Length = 383
Score = 238 bits (606), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 162/381 (42%), Positives = 199/381 (52%), Gaps = 70/381 (18%)
Query: 1 MATQIHHLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRVSDVDHRELLNRVNSDD 60
M TQIH LEQEAY +VLRAFKAQSDAI+WEKE LITELRKELRVSD +HRELL+RVN DD
Sbjct: 1 METQIHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEHRELLSRVNKDD 60
Query: 61 IIRSIREWRSAGGPQAMLPNNAQPMHDLAPSPTTSG-RKRQKTSQSFPALPAPPPVMHSQ 119
I+ IR+WR G Q QP D+ PSPT S RK+QKT FP+
Sbjct: 61 TIQRIRDWRQGGASQITRHATIQPF-DVLPSPTFSAARKKQKT---FPSY---------- 106
Query: 120 QLALQGXXXXXXXXXXXXXXXXXXXXXXXQKVPGGPSVKAMTSSAGPSGRGPHMNRNFPV 179
PS+ G +G NR
Sbjct: 107 ----------------------------------NPSI-------GATGNRSFNNRLVSS 125
Query: 180 GLVSFEPSEALHINPLINRKVMSRWPEDNSFYEATITDYNPETDLYALAYDINTANESWE 239
G+ E +EAL I RKV ++WPEDN FYEA IT YN + +AL YDI+ ANE+WE
Sbjct: 126 GISGNESAEAL-----IGRKVWTKWPEDNHFYEAIITQYNADEGRHALVYDIHAANETWE 180
Query: 240 WVDLKQMGPEDIRWQGDDPGIYQGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVSRKD 299
WVDLK++ PEDIRW G++ G+ + H R++
Sbjct: 181 WVDLKEIPPEDIRWDGEESGVALNIGHGSASFRGNRRGQIHGGRGRGPRI----HQPRRE 236
Query: 300 F---PPSQNGVGKR--SSDDIDILHTESLIKEVERVFSINNPDPXXXXXXXXXXXXXXXS 354
P QNG G R SSDDI++ +T+SL+KEVERVF +PDP +
Sbjct: 237 LVPPPTQQNGSGGRRTSSDDIELFNTDSLVKEVERVFDSTHPDPLELDKAKKMLKEHEQA 296
Query: 355 LIDAIARLAEASDGESDEHNR 375
LI AIARLA+ SDGE +N+
Sbjct: 297 LIAAIARLADTSDGEMGNNNK 317
>AT5G06780.1 | chr5:2094147-2096377 REVERSE LENGTH=321
Length = 320
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 110/203 (54%), Gaps = 11/203 (5%)
Query: 170 GPHMNRNFPVGLVSF-EPSEALHINPLINRKVMSRWPEDNSFYEATITDYNPETDLYALA 228
G +++F +VS EP+EAL I RKV ++WPEDNSFYEA +T YN +AL
Sbjct: 114 GSTRSKSFNNRVVSANEPAEAL-----IGRKVWTKWPEDNSFYEAVVTQYNANEGRHALV 168
Query: 229 YDINTANESWEWVDLKQMGPEDIRWQGDDPGIYQGVXXXXXXXXXXXXXXXXXXXXXXXX 288
YDINT NE+WEWVDL ++ +DIRW G++ G+ V
Sbjct: 169 YDINTVNETWEWVDLNEIPTKDIRWDGEEDGVTLNVGHGGGTTRGNRRTLSHGGRGRGPR 228
Query: 289 XXXXXHVSRKDFPPSQNGVGKRSSDDIDILHTESLIKEVERVFSINNPDPXXXXXXXXXX 348
R++ ++NG G++ +I++ +T+SL+KEVERVF N PDP
Sbjct: 229 TQ-----PRREHLATENGGGRKFFGEIELFNTDSLVKEVERVFDSNLPDPHELDKAKKLL 283
Query: 349 XXXXXSLIDAIARLAEASDGESD 371
+LI AIARL +ASD ESD
Sbjct: 284 KEHEQALIAAIARLTDASDYESD 306
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 80/110 (72%), Gaps = 5/110 (4%)
Query: 1 MATQIHHLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRVSDVDHRELLNRVNSDD 60
M QIH LEQEAY +VLRAF+AQ+D +W+K ++T LRKELR+SD ++R+LLN V++DD
Sbjct: 8 MEAQIHILEQEAYSAVLRAFQAQADEFSWDKATVMTNLRKELRISDDENRQLLNNVHNDD 67
Query: 61 IIRSIREWRSAGGPQAMLPNNAQPMHDLAPSPTTSG-RKRQKTSQSFPAL 109
+I+ IR+ R GG Q + + D+ PSPT S RK+QKT QS+P++
Sbjct: 68 LIKRIRDSRPRGGNQVVRHQSL----DVHPSPTFSASRKKQKTFQSYPSI 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,096,483
Number of extensions: 311016
Number of successful extensions: 782
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 8
Length of query: 409
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,337,553
Effective search space: 2567966324
Effective search space used: 2567966324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)