BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0451400 Os08g0451400|AK066110
(761 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0451400 AT-rich interaction region domain containing p... 1519 0.0
Os08g0451700 Conserved hypothetical protein 630 0.0
Os08g0361000 Conserved hypothetical protein 421 e-117
Os09g0434100 Conserved hypothetical protein 391 e-109
Os08g0451500 Conserved hypothetical protein 292 5e-79
>Os08g0451400 AT-rich interaction region domain containing protein
Length = 761
Score = 1519 bits (3934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/761 (96%), Positives = 737/761 (96%)
Query: 1 MAQIQSSSLVNCTLLAVLCGKVTDKQQKPPGLVPEVKRPRLSYPFPELISSGRLEVHTLI 60
MAQIQSSSLVNCTLLAVLCGKVTDKQQKPPGLVPEVKRPRLSYPFPELISSGRLEVHTLI
Sbjct: 1 MAQIQSSSLVNCTLLAVLCGKVTDKQQKPPGLVPEVKRPRLSYPFPELISSGRLEVHTLI 60
Query: 61 NPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTIV 120
NPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTIV
Sbjct: 61 NPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTIV 120
Query: 121 YLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQ 180
YLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQ
Sbjct: 121 YLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQ 180
Query: 181 ASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLPXXXXXXXXXXXXHFPAIKIYDEDVNM 240
ASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLP HFPAIKIYDEDVNM
Sbjct: 181 ASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLPENEMVEEEGSSEHFPAIKIYDEDVNM 240
Query: 241 KLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAETLPHGVVTMR 300
KLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAETLPHGVVTMR
Sbjct: 241 KLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAETLPHGVVTMR 300
Query: 301 CDITTCXXXXXXXXXXXXPQTCFDDKLLENHIKKEIVEKGQLVRAVLVREDDKPSSVEPL 360
CDITTC PQTCFDDKLLENHIKKEIVEKGQLVRAVLVREDDKPSSVEPL
Sbjct: 301 CDITTCSSSHVSLLVSGSPQTCFDDKLLENHIKKEIVEKGQLVRAVLVREDDKPSSVEPL 360
Query: 361 TSISVASGASTFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVD 420
TSISVASGASTFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVD
Sbjct: 361 TSISVASGASTFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVD 420
Query: 421 RLLFFCKNEAIVNGLYSHLPRWSASLVKDRLKGTPESKSSTFSANGVGEYQKHPMKGTSL 480
RLLFFCKNEAIVNGLYSHLPRWSASLVKDRLKGTPESKSSTFSANGVGEYQKHPMKGTSL
Sbjct: 421 RLLFFCKNEAIVNGLYSHLPRWSASLVKDRLKGTPESKSSTFSANGVGEYQKHPMKGTSL 480
Query: 481 VVKPKLKSAKMRPIPHSSKRQMHPFVGIPPSFIHDASQVKPSLPAPPVRHNALPVAPTTQ 540
VVKPKLKSAKMRPIPHSSKRQMHPFVGIPPSFIHDASQVKPSLPAPPVRHNALPVAPTTQ
Sbjct: 481 VVKPKLKSAKMRPIPHSSKRQMHPFVGIPPSFIHDASQVKPSLPAPPVRHNALPVAPTTQ 540
Query: 541 RKLSSGTSRVEPAVPLNPLPMKKHGCDRLPIGICSEEDFLKDVMQFLLQRGHTRLVPQGG 600
RKLSSGTSRVEPAVPLNPLPMKKHGCDRLPIGICSEEDFLKDVMQFLLQRGHTRLVPQGG
Sbjct: 541 RKLSSGTSRVEPAVPLNPLPMKKHGCDRLPIGICSEEDFLKDVMQFLLQRGHTRLVPQGG 600
Query: 601 LAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMSNHTVTNKMTGVGNT 660
LAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMSNHTVTNKMTGVGNT
Sbjct: 601 LAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMSNHTVTNKMTGVGNT 660
Query: 661 LKRHYETYLLEYELSHDDVGGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKD 720
LKRHYETYLLEYELSHDDVGGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKD
Sbjct: 661 LKRHYETYLLEYELSHDDVGGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKD 720
Query: 721 YAKTDGLEYICPHCSLANYKKKPPPPESANGFRIASAQRNI 761
YAKTDGLEYICPHCSLANYKKKPPPPESANGFRIASAQRNI
Sbjct: 721 YAKTDGLEYICPHCSLANYKKKPPPPESANGFRIASAQRNI 761
>Os08g0451700 Conserved hypothetical protein
Length = 464
Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/463 (69%), Positives = 362/463 (78%), Gaps = 7/463 (1%)
Query: 1 MAQIQSSSLVNCTLLAVLCGKVTDKQQKPPGLVPEVKRPRLSYPFPELISSGRLEVHTLI 60
M+ +S S V CT+LAVLCGKV KQ+ PPG VPE +RPR S+PF ELISSGRL+VHTLI
Sbjct: 1 MSHFKSGSRVKCTMLAVLCGKVG-KQRTPPGPVPESQRPRPSFPFLELISSGRLDVHTLI 59
Query: 61 NPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTIV 120
NPTVDQF +AQ+A+QP +YLQGQ L+NEEEIG LVWGDADVSDPQ FSSLI PFPTIV
Sbjct: 60 NPTVDQFLEAQRALQPRFIYLQGQLLDNEEEIGALVWGDADVSDPQTFSSLICSPFPTIV 119
Query: 121 YLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQ 180
YLEVP+GEK+AQSLQ KGI Y++YWR S SSYAASHFR +L+SVV+SSCSH WDAFQLA
Sbjct: 120 YLEVPSGEKIAQSLQSKGISYIMYWRYSLSSYAASHFRHSLLSVVRSSCSHAWDAFQLAY 179
Query: 181 ASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLPXXXXXXXXXXXXHFPAIKIYDEDVNM 240
ASF YC RNND Q + LGP LLGDAP+I I P +FP IKIYDEDV++
Sbjct: 180 ASFEQYCVRNNDVQRLMLGPHLLGDAPRIYITPPGNKMAEEEDTSEYFPDIKIYDEDVHL 239
Query: 241 KLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAET-LPHGVVTM 299
KLLICGA C D+S+L SLEDGLNALLNIE R C+LQ+RVSAA PPLH ++ L GVVT+
Sbjct: 240 KLLICGAHCTPDSSILNSLEDGLNALLNIEFRWCKLQDRVSAA-PPLHVDSALLDGVVTI 298
Query: 300 RCDITTCXXXXXXXXXXXXPQTCFDDKLLENHIKKEIVEKGQLVRAVLVREDDKPSSVEP 359
CDITT PQTCFDD+LLE HIKKE++E +LVR V V EDD PSS EP
Sbjct: 299 CCDITTSSSSHVSLLLSGSPQTCFDDELLEKHIKKELIESRRLVRVVSVSEDDGPSSAEP 358
Query: 360 LTSISVASGASTFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDV 419
LTS+SVASGASTFEV MTLPKWA QVLKYLA E SYKSLVPLGIA VN TPVSSFD++DV
Sbjct: 359 LTSMSVASGASTFEVLMTLPKWAAQVLKYLAQETSYKSLVPLGIASVNDTPVSSFDKEDV 418
Query: 420 DRLLFFCKN----EAIVNGLYSHLPRWSASLVKDRLKGTPESK 458
DRLLFFC N EAI NGLY HLPRWSASL KDR+K SK
Sbjct: 419 DRLLFFCTNQDEDEAIGNGLYHHLPRWSASLAKDRVKRNFVSK 461
>Os08g0361000 Conserved hypothetical protein
Length = 325
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/324 (67%), Positives = 245/324 (75%), Gaps = 5/324 (1%)
Query: 138 GIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQASFRLYCARNNDAQSVK 197
GI Y++YWR S SSYAASHFR +L+SVVQSSCSH WDAFQ+A A+F+LYC RNN+ Q +
Sbjct: 1 GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEVQRLM 60
Query: 198 LGPRLLGDAPKINIFLPXXXXXXXXXXXXHFPAIKIYDEDVNMKLLICGAPCILDASLLG 257
LGP LLGDAP+I I P +FP IKIYDEDVN+KLLICGA C LD+SLL
Sbjct: 61 LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHCTLDSSLLN 120
Query: 258 SLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAE-TLPHGVVTMRCDITTCXXXXXXXXXX 316
SLEDGLNALLNIE R C+LQ+RVSAAPP LH + TL G+VT+ CDITT
Sbjct: 121 SLEDGLNALLNIEFRWCKLQDRVSAAPP-LHVDSTLLDGMVTICCDITTSSSSHVSLLLS 179
Query: 317 XXPQTCFDDKLLENHIKKEIVEKGQLVRAVLVREDDKPSSVEPLTSISVASGASTFEVWM 376
PQTCFDDKLLE HIKKE++E QLVR V V E D PSS EPLTS+SVASGASTFEV M
Sbjct: 180 GSPQTCFDDKLLEKHIKKELIESRQLVRVVSVSE-DGPSSAEPLTSMSVASGASTFEVLM 238
Query: 377 TLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVDRLLFF--CKNEAIVNG 434
TLPKWA QVLKYLA E SYKSLVPLGIA VNGTPV SFD QDVD LLFF ++EAI
Sbjct: 239 TLPKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVCSFDSQDVDWLLFFRTIQDEAIGTS 298
Query: 435 LYSHLPRWSASLVKDRLKGTPESK 458
LY H PRWSASL K+R+KG+ SK
Sbjct: 299 LYPHPPRWSASLAKNRVKGSMVSK 322
>Os09g0434100 Conserved hypothetical protein
Length = 295
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/278 (71%), Positives = 219/278 (78%), Gaps = 3/278 (1%)
Query: 1 MAQIQSSSLVNCTLLAVLCGKVTDKQ-QKPPGLVPEVKRPRLSYPFPELISSGRLEVHTL 59
M+QIQS S NC LLAVLCGK +K+ Q GL E KR R SYPFPEL SSGRLEVHTL
Sbjct: 1 MSQIQSFSRQNCVLLAVLCGKHAEKRAQARSGL--EAKRLRPSYPFPELSSSGRLEVHTL 58
Query: 60 INPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTI 119
NPT +QF +AQ+ VQPN +Y+QGQQLE+E+EIG+LVWGD DVSDPQ FS LISPPFPTI
Sbjct: 59 FNPTPEQFLEAQRVVQPNFLYIQGQQLEDEKEIGSLVWGDNDVSDPQAFSCLISPPFPTI 118
Query: 120 VYLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLA 179
VYLEVP GEKLAQ++ KGIPYV+YWRNSFSSYAASHFR AL+SVVQSS SHTWDAFQLA
Sbjct: 119 VYLEVPIGEKLAQAVHSKGIPYVIYWRNSFSSYAASHFRHALMSVVQSSVSHTWDAFQLA 178
Query: 180 QASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLPXXXXXXXXXXXXHFPAIKIYDEDVN 239
ASFRLYC RNN QSVKLGPRLLGDAPKINI P FPAIKIYD+D+N
Sbjct: 179 HASFRLYCVRNNHVQSVKLGPRLLGDAPKINITPPENEMVEEEGSSDVFPAIKIYDDDIN 238
Query: 240 MKLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQ 277
MK L+CG P D LLGSLEDGLNALLNIE+ LQ
Sbjct: 239 MKFLLCGVPSTPDPCLLGSLEDGLNALLNIEVWNKALQ 276
>Os08g0451500 Conserved hypothetical protein
Length = 298
Score = 292 bits (748), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/212 (72%), Positives = 166/212 (78%), Gaps = 6/212 (2%)
Query: 252 DASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAE-TLPHGVVTMRCDITTCXXXX 310
D+S+L SLEDGLNALLNIE R C+LQ+RVSAAPP LH + TL GVVT+ CDITT
Sbjct: 85 DSSILNSLEDGLNALLNIEFRWCKLQDRVSAAPP-LHVDSTLLDGVVTICCDITTSSSSH 143
Query: 311 XXXXXXXXPQTCFDDKLLENHIKKEIVEKGQLVRAVLVREDDKPSSVEPLTSISVASGAS 370
PQTCFDDKLLE HIKKE++E +LVR V V EDD+PSS EPLTS+SVASGAS
Sbjct: 144 VSLLHSGSPQTCFDDKLLEKHIKKELIESRRLVRVVSVSEDDRPSSAEPLTSMSVASGAS 203
Query: 371 TFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVDRLLFFCKN-- 428
TFEV MTLPKWA QVLKYLA E SYKSLVPLGIA VNGTPVSSFDRQDVDRLLFFC N
Sbjct: 204 TFEVLMTLPKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVSSFDRQDVDRLLFFCTNQD 263
Query: 429 --EAIVNGLYSHLPRWSASLVKDRLKGTPESK 458
EAI NGLY H PRWSASL KDR+KG SK
Sbjct: 264 EDEAIANGLYHHPPRWSASLAKDRVKGNMVSK 295
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 82/105 (78%)
Query: 54 LEVHTLINPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLIS 113
++VHTLINPTVDQF +AQ+A+QP MY QGQQL+ EEEIG LVWGDADVSDPQIFSSLI
Sbjct: 1 MQVHTLINPTVDQFLEAQRALQPRFMYFQGQQLDKEEEIGRLVWGDADVSDPQIFSSLIC 60
Query: 114 PPFPTIVYLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFR 158
PPFPTIVYLEVP+GEK+AQSLQ K + + ++ FR
Sbjct: 61 PPFPTIVYLEVPSGEKIAQSLQSKDSSILNSLEDGLNALLNIEFR 105
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,789,828
Number of extensions: 1246578
Number of successful extensions: 3489
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3483
Number of HSP's successfully gapped: 6
Length of query: 761
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 653
Effective length of database: 11,396,689
Effective search space: 7442037917
Effective search space used: 7442037917
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)