Os09g0434100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0434100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.77 | 0.277 | 9.47 | 0.339 | 0.517 | -0.773 | -0.422 | 1.54 | 0.406 | 8.7 | 20.77 | 334 | -- | -- |
| 36.41 | 0.281 | 9.51 | 0.0672 | 0.524 | -0.728 | -0.615 | -- | 0.322 | 7.68 | 16.48 | 572 | -- | -- |
| 35.23 | 0.276 | 9.47 | 0.364 | 0.501 | -0.766 | -- | 1.76 | 0.411 | 8.51 | 20.95 | 380 | -- | -- |
| 37.38 | 0.285 | 9.51 | 0.0089 | 0.56 | -0.632 | -- | -- | 0.307 | 8.67 | 21.69 | 265 | -- | -- |
| 44.58 | 0.311 | 9.47 | 0.531 | -- | -1.12 | -- | 2.21 | 0.487 | -- | 22.08 | 520 | -- | -- |
| 43.84 | 0.31 | 9.53 | -0.118 | 0.733 | -- | -0.472 | -- | 0.202 | 7.51 | -- | -- | -- | -- |
| 44.45 | 0.312 | 9.53 | -0.129 | 0.732 | -- | -- | -- | 0.203 | 7.49 | -- | -- | -- | -- |
| 48.25 | 0.324 | 9.52 | 0.0708 | -- | -0.936 | -- | -- | 0.329 | -- | 23.57 | 533 | -- | -- |
| 37.38 | 0.285 | 9.51 | -- | 0.562 | -0.627 | -- | -- | 0.305 | 8.66 | 21.7 | 263 | -- | -- |
| 73.13 | 0.4 | 9.55 | -0.118 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 44.89 | 0.313 | 9.53 | -- | 0.731 | -- | -- | -- | 0.217 | 7.5 | -- | -- | -- | -- |
| 48.34 | 0.324 | 9.53 | -- | -- | -0.926 | -- | -- | 0.302 | -- | 24.17 | 529 | -- | -- |
| 73.49 | 0.4 | 9.54 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 2 | 31.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 10 | 31.89 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 36 | 32.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 53 | 32.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 56 | 32.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 60 | 32.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 72 | 33.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 78 | 33.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 79 | 33.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 91 | 33.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 94 | 33.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 143 | 33.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 146 | 33.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 192 | 33.91 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 253 | 34.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 290 | 34.32 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 307 | 34.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 374 | 34.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 406 | 34.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 421 | 34.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 549 | 35.07 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 560 | 35.10 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 566 | 35.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 586 | 35.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 588 | 35.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 593 | 35.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 595 | 35.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 596 | 35.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 615 | 35.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 641 | 35.29 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 9 |
| 661 | 35.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 670 | 35.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 675 | 35.36 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 7 |
| 768 | 35.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 800 | 35.57 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 878 | 35.66 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 14 |
| 883 | 35.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 916 | 35.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 926 | 35.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 7 |
| 937 | 35.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 940 | 35.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 4 |