FiT-DB / Search/ Help/ Sample detail

Os08g0451700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.35 (0.0246) R2 : 0.347
β1 : -1.22 (0.0903) R2dD : 0.27 R2D : 0.297
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.268 (0.0526) R2dN8 : 0.0497 R2N8 : 0.0773
σ : 0.463
deviance : 98.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.35 0.421 6.35 -1.13 0.183 0.631 0.47 -0.137 0.248 8.72 29.8 251 -- --
80.35 0.417 6.35 -1.15 0.183 0.617 0.466 -- 0.246 8.71 29.75 250 -- --
80.77 0.419 6.35 -1.13 0.221 0.59 -- -0.0531 0.243 7.3 29.8 251 -- --
80.76 0.419 6.35 -1.13 0.218 0.588 -- -- 0.244 7.18 29.8 251 -- --
82.12 0.422 6.35 -1.18 -- 0.635 -- 0.504 0.281 -- 29.37 409 -- --
88.69 0.442 6.34 -1.23 0.412 -- 0.435 -- 0.261 6.45 -- -- -- --
89.07 0.442 6.34 -1.23 0.416 -- -- -- 0.259 6.1 -- -- -- --
82.21 0.422 6.34 -1.12 -- 0.673 -- -- 0.291 -- 29.37 408 -- --
114.3 0.498 6.33 -- 0.135 0.748 -- -- 0.35 7.07 29.8 265 -- --
98.05 0.463 6.35 -1.22 -- -- -- -- 0.268 -- -- -- -- --
128.8 0.531 6.31 -- 0.399 -- -- -- 0.395 6.25 -- -- -- --
114.58 0.499 6.32 -- -- 0.834 -- -- 0.393 -- 29.52 408 -- --
137.05 0.546 6.32 -- -- -- -- -- 0.403 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.10 temperature 30.0 270 < th dose independent rect. 17 22
7 79.19 humidity 70.0 270 < th dose independent sin 17 NA
8 79.19 temperature 30.0 270 < th dose independent rect. 6 15
9 79.20 humidity 70.0 270 > th dose independent sin 16 NA
17 79.38 humidity 70.0 270 < th dose independent rect. 12 8
30 79.43 wind 1.0 4320 < th dose dependent rect. 12 2
32 79.48 precipitation 0.1 4320 < th dose independent rect. 5 2
34 79.48 precipitation 0.1 4320 < th dose dependent rect. 5 2
35 79.50 wind 1.0 4320 < th dose independent rect. 12 2
57 79.70 wind 1.0 4320 < th dose independent rect. 11 4
58 79.72 precipitation 0.1 4320 > th dose independent rect. 5 2
60 79.72 wind 1.0 4320 < th dose independent rect. 11 8
63 79.77 precipitation 0.1 4320 > th dose dependent rect. 5 2
64 79.82 wind 1.0 4320 > th dose independent rect. 12 2
69 79.87 humidity 70.0 270 < th dose independent rect. 15 2
72 79.91 humidity 70.0 270 > th dose independent rect. 14 11
78 79.98 temperature 30.0 270 < th dose independent sin 23 NA
99 80.11 wind 1.0 4320 > th dose independent rect. 11 8
108 80.14 temperature 30.0 720 < th dose independent rect. 3 8
122 80.17 wind 3.0 90 > th dose independent rect. 11 9
123 80.18 humidity 80.0 90 < th dose independent rect. 15 5
126 80.18 precipitation 0.1 4320 > th dose dependent rect. 5 4
129 80.21 wind 1.0 270 > th dose dependent rect. 24 18
131 80.23 precipitation 0.1 4320 > th dose independent rect. 5 4
132 80.23 wind 1.0 90 > th dose dependent rect. 11 9
144 80.29 wind 3.0 270 > th dose independent rect. 9 9
148 80.30 temperature 30.0 270 < th dose independent rect. 24 23
162 80.34 wind 3.0 270 > th dose independent rect. 1 17
172 80.38 wind 1.0 1440 < th dose dependent rect. 8 6
178 80.43 temperature 30.0 720 < th dose independent rect. 6 6
179 80.44 radiation 1.0 4320 > th dose independent rect. 6 2
180 80.44 radiation 1.0 4320 > th dose independent rect. 6 4
200 80.50 radiation 1.0 4320 < th dose independent rect. 6 2
202 80.50 radiation 1.0 4320 < th dose independent rect. 6 5
213 80.52 temperature 30.0 270 < th dose independent rect. 4 23
217 80.53 precipitation 0.1 4320 > th dose dependent rect. 5 8
223 80.55 radiation 40.0 720 > th dose dependent rect. 12 23
241 80.59 wind 1.0 270 > th dose dependent rect. 9 9
243 80.60 temperature 30.0 270 > th dose independent rect. 15 23
255 80.64 precipitation 0.1 4320 > th dose independent rect. 5 8
275 80.69 temperature 25.0 720 > th dose dependent rect. 8 1
277 80.70 temperature 30.0 720 < th dose independent rect. 20 16
286 80.74 humidity 90.0 270 < th dose dependent rect. 12 8
289 80.75 humidity 90.0 14400 > th dose dependent rect. 6 12
293 80.76 humidity 90.0 14400 > th dose dependent rect. 6 9
299 80.78 temperature 30.0 270 < th dose independent rect. 20 23
301 80.79 temperature 30.0 270 < th dose independent sin 10 NA
303 80.79 wind 1.0 1440 < th dose independent rect. 8 6
331 80.83 temperature 30.0 270 < th dose independent no NA NA
339 80.85 radiation 1.0 4320 < th dose independent rect. 6 11
342 80.86 humidity 70.0 720 < th dose independent rect. 9 8
343 80.86 radiation 1.0 4320 > th dose independent rect. 6 11
345 80.86 temperature 30.0 270 < th dose independent rect. 3 20
346 80.86 wind 5.0 270 < th dose dependent rect. 6 13
351 80.88 temperature 30.0 720 < th dose independent sin 7 NA
352 80.88 temperature 30.0 270 < th dose independent sin 17 NA
358 80.89 humidity 60.0 14400 < th dose independent rect. 13 1
368 80.90 temperature 30.0 720 < th dose independent rect. 9 2
377 80.90 radiation 40.0 720 > th dose dependent sin 17 NA
382 80.92 wind 3.0 270 < th dose independent rect. 6 13
403 80.95 humidity 70.0 270 > th dose independent rect. 14 21
419 80.98 temperature 30.0 720 < th dose independent rect. 6 9
442 81.01 radiation 30.0 720 > th dose dependent rect. 13 20
444 81.02 temperature 30.0 270 > th dose independent rect. 18 23
472 81.05 temperature 30.0 270 > th dose independent no NA NA
473 81.05 temperature 30.0 270 > th dose independent rect. 8 11
565 81.05 radiation 40.0 720 > th dose dependent rect. 8 7
589 81.06 radiation 40.0 720 > th dose dependent no NA NA
737 81.08 precipitation 0.1 4320 > th dose independent rect. 3 12
747 81.10 radiation 40.0 720 < th dose independent rect. 13 22
768 81.12 humidity 80.0 14400 > th dose independent rect. 8 2
775 81.12 wind 1.0 720 < th dose dependent rect. 7 19
778 81.13 precipitation 0.1 4320 < th dose independent rect. 3 12
779 81.13 temperature 30.0 720 < th dose independent rect. 22 14
784 81.13 radiation 40.0 720 > th dose dependent sin 13 NA
793 81.13 precipitation 0.1 4320 < th dose dependent rect. 3 12
826 81.16 temperature 30.0 720 < th dose independent rect. 24 15
829 81.17 humidity 60.0 14400 > th dose independent rect. 13 1
834 81.17 wind 1.0 720 < th dose independent rect. 6 20
872 81.20 wind 1.0 1440 < th dose dependent rect. 8 11
904 81.23 humidity 80.0 10 < th dose independent rect. 16 4
914 81.24 humidity 70.0 720 < th dose independent rect. 19 22
917 81.24 wind 1.0 30 > th dose dependent rect. 4 16
923 81.25 temperature 30.0 270 < th dose independent rect. 9 23
958 81.28 humidity 80.0 14400 < th dose independent rect. 9 1
968 81.29 temperature 30.0 270 > th dose independent sin 22 NA
972 81.29 humidity 70.0 720 < th dose independent rect. 6 11
997 81.30 humidity 90.0 14400 > th dose dependent sin 23 NA