BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0440300 Os08g0440300|AK107167
         (93 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0440300  Ribonuclease CAF1 family protein                    192   4e-50
Os09g0416800  Similar to CCR4-NOT transcription complex subu...   134   2e-32
Os02g0796300  Similar to CCR4-NOT transcription complex subu...   120   3e-28
Os04g0684900  Ribonuclease CAF1 family protein                     79   7e-16

>Os08g0440300 Ribonuclease CAF1 family protein
          Length = 93

 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE 60
          LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE
Sbjct: 1  LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE 60

Query: 61 VYFKGSTEKHAGVLYGLVIEDGVNRPPPTQPNE 93
          VYFKGSTEKHAGVLYGLVIEDGVNRPPPTQPNE
Sbjct: 61 VYFKGSTEKHAGVLYGLVIEDGVNRPPPTQPNE 93



>Os09g0416800 Similar to CCR4-NOT transcription complex subunit 7
           (CCR4-associated factor 1) (CAF1) (BTG1 binding factor
           1)
          Length = 280

 Score =  134 bits (336), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 1   LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE 60
           LIRIYFPV+YDIKHLMRFC++LHGGL++L ELLDV+RVG CHQAGSDSLLT   + K+KE
Sbjct: 192 LIRIYFPVVYDIKHLMRFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTALSFKKLKE 251

Query: 61  VYFKGSTEKHAGVLYGLVIEDG 82
            YF G TEK+AGVLYGL  E G
Sbjct: 252 AYFNGLTEKYAGVLYGLGTEGG 273



>Os02g0796300 Similar to CCR4-NOT transcription complex subunit 7
           (CCR4-associated factor 1) (CAF1) (BTG1 binding factor
           1)
          Length = 295

 Score =  120 bits (300), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 71/84 (84%)

Query: 1   LIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKE 60
           L++IYFP +YDIKHLM+FC++LHGGL++L ELLDV+RVG  HQAGSDSL+T   + K+K+
Sbjct: 210 LMKIYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVERVGESHQAGSDSLVTSCAFWKLKD 269

Query: 61  VYFKGSTEKHAGVLYGLVIEDGVN 84
            +F GSTEK+AGVLYGL  E+ V+
Sbjct: 270 SFFAGSTEKYAGVLYGLNAENVVS 293



>Os04g0684900 Ribonuclease CAF1 family protein
          Length = 289

 Score = 79.0 bits (193), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 5/96 (5%)

Query: 1   LIRIYF-PVLYDIKHLMRFCS-NLHGGLSRLGELLDVKRV-GTCHQAGSDSLLTLGCYNK 57
           L+R++F   +YD+KH+MR C   L+GGL R+   L VKR  G CHQA SDSLLT   + +
Sbjct: 189 LVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFRR 248

Query: 58  IKEVYF-KGSTEKHAGVLYGLVIE-DGVNRPPPTQP 91
           ++E+YF K   E + GVL+GL ++ D  +   P+ P
Sbjct: 249 MRELYFLKHGVEAYQGVLFGLELDMDMPSNKTPSLP 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.144    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,654,457
Number of extensions: 128132
Number of successful extensions: 202
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 4
Length of query: 93
Length of database: 17,035,801
Length adjustment: 62
Effective length of query: 31
Effective length of database: 13,798,533
Effective search space: 427754523
Effective search space used: 427754523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)