Os02g0796300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) (BTG1 binding factor 1).
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Os02g0796300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) (BTG1 binding factor 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.9 | 0.257 | 10.5 | 0.519 | 0.983 | 0.577 | 0.121 | -0.517 | -0.148 | 9.6 | 19.5 | 1366 | -- | -- |
| 29.86 | 0.255 | 10.5 | 0.512 | 0.966 | 0.725 | 0.201 | -- | -0.146 | 9.56 | 18.49 | 2245 | -- | -- |
| 29.95 | 0.255 | 10.5 | 0.524 | 0.983 | 0.579 | -- | -0.511 | -0.148 | 9.61 | 19.49 | 1373 | -- | -- |
| 29.99 | 0.255 | 10.5 | 0.526 | 0.959 | 0.723 | -- | -- | -0.152 | 9.57 | 18.45 | 2246 | -- | -- |
| 78.34 | 0.412 | 10.5 | 0.535 | -- | 0.694 | -- | -0.249 | -0.0892 | -- | 21.2 | 789 | -- | -- |
| 37.54 | 0.287 | 10.5 | 0.2 | 0.991 | -- | 0.129 | -- | -0.278 | 9.68 | -- | -- | -- | -- |
| 37.61 | 0.287 | 10.5 | 0.204 | 0.99 | -- | -- | -- | -0.278 | 9.69 | -- | -- | -- | -- |
| 77.94 | 0.411 | 10.5 | 0.531 | -- | 0.92 | -- | -- | -0.116 | -- | 19.44 | 788 | -- | -- |
| 35.14 | 0.276 | 10.5 | -- | 0.986 | 0.629 | -- | -- | -0.243 | 9.5 | 17.6 | 2202 | -- | -- |
| 95.78 | 0.457 | 10.5 | 0.196 | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
| 38.71 | 0.291 | 10.5 | -- | 0.989 | -- | -- | -- | -0.301 | 9.67 | -- | -- | -- | -- |
| 84.22 | 0.427 | 10.5 | -- | -- | 0.633 | -- | -- | -0.191 | -- | 20.3 | 774 | -- | -- |
| 96.79 | 0.459 | 10.6 | -- | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.11 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 18 |
| 14 | 29.61 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 30 | 29.82 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 18 |
| 32 | 29.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 33 | 29.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 47 | 29.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 53 | 29.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 57 | 29.89 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 59 | 29.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 103 | 29.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 116 | 29.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 117 | 29.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 139 | 29.96 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 6 |
| 178 | 29.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 210 | 30.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 239 | 30.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 266 | 30.04 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 22 |
| 542 | 30.24 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 551 | 30.25 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 579 | 30.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 580 | 30.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 613 | 30.32 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 10 |
| 642 | 30.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 643 | 30.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 646 | 30.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 647 | 30.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 808 | 30.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 818 | 30.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 832 | 30.52 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 860 | 30.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 872 | 30.56 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 925 | 30.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 943 | 30.62 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 984 | 30.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 10 |
| 994 | 30.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 18 |