Os08g0440300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribonuclease CAF1 family protein.
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Os08g0440300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribonuclease CAF1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.88 | 0.567 | 5.51 | 0.717 | 0.957 | 1.19 | -0.363 | 0.0579 | -0.45 | 8.17 | 68 | 6825 | -- | -- |
| 145.88 | 0.563 | 5.51 | 0.715 | 0.959 | 1.2 | -0.369 | -- | -0.45 | 8.16 | 68 | 6820 | -- | -- |
| 146.26 | 0.563 | 5.51 | 0.711 | 0.954 | 1.19 | -- | 0.118 | -0.45 | 8.24 | 68.07 | 6820 | -- | -- |
| 146.27 | 0.563 | 5.51 | 0.705 | 0.958 | 1.2 | -- | -- | -0.45 | 8.24 | 68.09 | 6820 | -- | -- |
| 190.66 | 0.643 | 5.52 | 0.763 | -- | 1.15 | -- | 0.203 | -0.453 | -- | 68.86 | 7155 | -- | -- |
| 166.25 | 0.604 | 5.49 | 0.603 | 0.903 | -- | -0.417 | -- | -0.353 | 7.88 | -- | -- | -- | -- |
| 166.74 | 0.605 | 5.49 | 0.593 | 0.902 | -- | -- | -- | -0.352 | 7.97 | -- | -- | -- | -- |
| 190.43 | 0.643 | 5.54 | 0.737 | -- | 1.15 | -- | -- | -0.45 | -- | 69 | 7156 | -- | -- |
| 158.79 | 0.587 | 5.53 | -- | 0.983 | 1.06 | -- | -- | -0.542 | 8.12 | 70 | 6786 | -- | -- |
| 211.11 | 0.679 | 5.51 | 0.602 | -- | -- | -- | -- | -0.34 | -- | -- | -- | -- | -- |
| 176 | 0.621 | 5.5 | -- | 0.906 | -- | -- | -- | -0.418 | 7.92 | -- | -- | -- | -- |
| 204.31 | 0.666 | 5.55 | -- | -- | 1.03 | -- | -- | -0.524 | -- | 68.97 | 7166 | -- | -- |
| 220.67 | 0.693 | 5.53 | -- | -- | -- | -- | -- | -0.407 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.31 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 3 | 142.33 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 4 | 142.33 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 14 | 142.34 | humidity | 60 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 19 | 142.60 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 20 | 142.67 | humidity | 70 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 22 | 142.69 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 23 | 142.69 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 28 | 142.70 | humidity | 70 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 41 | 142.77 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 43 | 142.79 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 46 | 142.80 | humidity | 60 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 82 | 142.92 | humidity | 60 | 14400 | > th | dose independent | sin | 6 | NA |
| 98 | 143.08 | humidity | 60 | 14400 | < th | dose independent | sin | 5 | NA |
| 224 | 143.82 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 5 |
| 301 | 144.10 | humidity | 80 | 14400 | < th | dose dependent | sin | 7 | NA |
| 303 | 144.11 | humidity | 80 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 313 | 144.14 | humidity | 60 | 14400 | > th | dose independent | no | NA | NA |
| 314 | 144.14 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 393 | 144.16 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 436 | 144.24 | humidity | 70 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 499 | 144.36 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 500 | 144.37 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 506 | 144.37 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 649 | 144.54 | humidity | 60 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 910 | 145.38 | humidity | 70 | 14400 | < th | dose dependent | no | NA | NA |
| 913 | 145.38 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 16 |